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Hi, I have RNA-seq data could we used it to call the miRNAs?
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Please write your comments about the miRNA annotation guidelines in this issue.
Reported by: rachhuntley
Original Ticket: [geneontology/annotation-issues/1292](https://sourceforge.net/p/geneontology…
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I was going to move
GO:0071051 polyadenylation-dependent snoRNA 3'-end processing under
co-transcriptional RNA 3'-end processing, cleavage and polyadenylation pathway
Any process involved in tr…
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### Description of the bug
Dear authors:
The pipeline works fine except for Mirdeep2. It shows MIRDEEP2:MIRDEEP2_RUN failed. I checked all my files and parameters, but I can't solve this issue. Do…
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we will need to have some before we start showing this to humans
also to give feedback to humans
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I'm getting the above listed error. This is odd, as I've actually run this successfully previously, with a different subset of the same input reads!
If you happen to have any insight, I'd greatly a…
kubu4 updated
6 months ago
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https://mp.weixin.qq.com/s/jo_B6rZW4ygvo4j5t0Cg8w
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Hello, I'm new to the field of Informatics, so please excuse my question. I am trying to use your tool to see the differences in RNA types in the samples I have previously analyzed for microRNA, but I…
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Hi Mike.
A feature that I found useful in ShortStack 3 is gone. The reported "complexity" values did help curating bona fide miRNAs and identifying false positives. Could you re implement that?
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I run miRge3.0 like this，with Qiage UMI:
`miRge3.0 -s SRR13077007.fastq -db miRBase -lib miRge3_Lib -on human -a AACTGTAGGCACCATCAAT --qiagenumi -umi 0,12 -o output_dir -cpu 10 -udd`
Is the read…
hy101 updated
9 months ago