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The SAM file `pandora` is producing allows us to understand exactly how it is mapping regions of reads to PRGs. However, we did not yet evaluate this mapping in details in a coarse-grained way. We can…
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Hello,
A while back I aligned simulated reads to a graph using vg v1.4.0-1017-g0042f59. As part of a new test, I've reindexed the graph and remapped the simulated reads using v1.4.0-2142-gfe5e050 (…
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# Problem
@johnymontana explained to me [in this comment](https://github.com/neo4j-graphql/neo4j-graphql-js/pull/247#issuecomment-494579107) that all the tests are expected to pass. What I have to do…
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Hi there,
First, thanks for your work and the latest updates!
We stumbled across a few samples from the last months that pangolin assigns to a top-level lineage, namely BA.2 or XBB.1.
The nextc…
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Hello, I've run the somatic workflow in Strelka2 version 2.9.2 on a tumour-only-calling assay. But I get the error: "Requested indel error rates for sample index 1 when only 1 samples are defined", "F…
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Right now connectors implement certain types of behavior that could be reused. The most common example is filtering groups.
Consider creating a common middleware layer for connectors instead of imp…
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```python
from typing import MutableMapping
from neoclient import PathParams, get, request_depends
def add_path_params(path_params: MutableMapping[str, str] = PathParams()) -> None:
path…
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Hi!
One junction is missing in the SJ.out.tab file, which spans from chr17 29483058 - 29486025. As you can see, the missed junction is well covered by junction reads. What could be the reason behind …
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As discussed, it would be really useful to be able to compare (say) a ground truth tree sequence with unary-when-coalescent nodes left in, with the same version either inferred using tsinfer, or with …
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### JIRA:
https://careerbuilder.atlassian.net/browse/CE-307 (GraphQL)
https://careerbuilder.atlassian.net/browse/CE-160 (ElasticSearch Infrastructure)
https://careerbuilder.atlassian.net/browse/CE-…