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Support for channels as function output is not fully functional.
`main.nf`:
```nextflow
def defaultChannel(){
Channel.value(1)
}
```
with `main.nf.test`:
```
nextflow_function {
…
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Hello, thanks for the plugin!
I am having some issues with it, though. It is apparently deleting intermediate files marked for use in upcoming processes. When running my pipeline (which I created m…
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1. Create one container with all dependencies
Pipeline:
1. cmalign query sequences to 16s profile
2. esl-alimerge query and reference alignments
3. pplacer
4. guppy classifications classificati…
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### Description of the bug
I tried to run the test profile with `nextflow run nf-core/circrna -profile test,docker --outdir ./test` but get the error below. As both the test and test_full profiles us…
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### What happened?
Running `viash test` on Nextflow workflows still doesn't work. There are two main issues:
- [ ] It's not able to detect its dependencies:
```
viash test src/workflows/run_…
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### Description of the bug
Dear community.
I am having problems running the GTDBTK step in the mag pipeline, this is what I got as an error:
 a visual representation of a pipeline. This might help someone understand how the tool operates…
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Hi, I just tried to process my .scn files using the nextflow method.
First issue: the documentation says to run "nextflow run adamjtaylor/scn2ometiff ....." which didn't work. I was able to fix th…