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Goal: To develop a repository of processing pipelines that are associated with the NDA ‘studies’ functionality (https://ndar.nih.gov/data_from_papers.html) . The provenance information from publicatio…
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I found two folders that probably can be deleted. They both don't seem to serve any purpose:
- https://github.com/nipy/nipype/tree/master/nipype/tests
- https://github.com/nipy/nipype/tree/master/…
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👋 This dashboard summarizes my activity on the repository, including available improvement opportunities.
## Recommendations
_Last analysis: Jun 14 | Next scheduled analysis: Jun 21_
### Open
- h…
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### Summary
At least one user has reported issues with using fMRIPrep with low-memory processing on multi-echo data, as the T2* estimation step ends up being killed.
This stems from https://github…
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### Environment
* fitlins version: 0.11.0
### Expected Behavior
The model should be returning run-level and session-average contrast maps for a set of conditions in each subject. In some subjec…
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Dear Anders,
The nipype nodes provided with BROCCOLI work fine when executed on their own. Ideally, however, one would want to include them along-side with other nodes (e.g. FSL nodes) in nipype's …
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### Script/Job File
```
#!/bin/bash
#$ -pe smp 16
#$ -q UI
#$ -m bea
#$ -M adriana-rivera-dompenciel@uiowa.edu
#$ -o /Shared/vosslabhpc/Projects/CREST/code/fmriprep/out/
#$ -e /Shared/voss…
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### Summary
When I try to use `--with-prov`, it fails to move/copy provenance file, seemingly because it's looking in the wrong place. It's expecting it to be in the temp dir that it creates, b…
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```
231205-20:31:06,743 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 16 jobs ready. Free memory (GB): 4.00/10.00, Free processors: 0/1.
Currently running:
…
tsalo updated
12 months ago
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### What happened?
The [fmriprep-reproducibility](https://github.com/SIMEXP/fmriprep-reproducibility) project evaluates the numerical stability of fmriprep. This project uses the [fuzzy](https://gith…