nipy heudiconv issues - Githubissues

nipy / heudiconv

Flexible DICOM conversion into structured directory layouts

https://heudiconv.readthedocs.io

Other

237 stars 126 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

[gh-actions](deps): Bump codecov/codecov-action from 4 to 5

#805 dependabot[bot] closed 1 week ago
2
Refactor our "--command ls" into an external script to extract DICOM metadata

#804 yarikoptic opened 1 week ago
0
[WIP] Recompress files where dcm2niix failed

#803 octomike opened 2 weeks ago
1
[WIP] Handle dcm2niix not compressing nifti files

#802 octomike opened 2 weeks ago
5
chore!: drop support and testing for EOLed Python 3.8

#801 yarikoptic closed 3 weeks ago
2
[FIX] pin nibabel version

#800 bpinsard opened 3 weeks ago
3
Add Python 3.12 into github testing CI

#799 yarikoptic closed 3 weeks ago
3
repeated "Missing required base classification time" error

#797 andrew-yian-sun closed 4 weeks ago
1
Do specify filter="tar" when extracting tars

#796 yarikoptic closed 3 weeks ago
3
Add RRID somewhere on docs

#795 asmacdo closed 1 month ago
2
Singularity/Dockerfile - Numpy / Nibabel conflict (v1.2.0 / v1.3.0)

#794 SRSteinkamp closed 1 month ago
2
Fix assignment of sensitive git-annex metadata data via glob patterns (regression introduced by #739)

#793 bpinsard closed 1 month ago
7
Argument list too long

#792 hieukien212 opened 1 month ago
2
[ENH] lighter alpine multi-stage build docker image, ~65% smaller

#791 bpinsard opened 1 month ago
7
Docker image: Use newer debian stable for the base and newer dcm2niix

#790 yarikoptic closed 3 weeks ago
2
Issue with echo times from dual-echo field maps

#789 levchenkoegor opened 1 month ago
5
feat: rename BIDS files for multi-orientation series.

#788 bpinsard opened 2 months ago
6
BF(workaround): if heuristic provided just a string and not list of types -- make it into a tuple

#787 yarikoptic closed 1 month ago
2
heuristic.py for heudiconv 0.10.0 incompatible with heudiconv 1.20 (or 1.1.6) ?

#786 WilliamFCB closed 1 month ago
9
Refactor create_seqinfo tiny bit to avoid duplication and add logging; and in tests to reuse list of dicom paths

#785 yarikoptic closed 1 month ago
2
Just INFO not WARNING if heuristic is missing intotoids

#784 yarikoptic closed 2 months ago
2
infotoids

#783 WilliamFCB closed 2 months ago
9
Fixup testing: kludge for pydicom 3.0.0 in dcmstack, ignore some warnings from nipype for python 3.12

#782 yarikoptic closed 2 months ago
2
Run tests weekly to ensure we are still good

#781 yarikoptic closed 2 months ago
3
timezone aware

#780 AlanKuurstra closed 1 month ago
4
Rename s variable to curr_seqinfo in reproin heuristic

#779 tsalo closed 3 months ago
2
run pre-commit on all files to avoid unrelated errors in other PRs.

#778 bpinsard closed 3 months ago
3
Feature Request: support dicom datetime with timezone information

#777 AlanKuurstra opened 3 months ago
0
How are task-....json files created?

#776 Evgeniia-Gapontseva opened 4 months ago
0
events files get re-created for existing bold files (batch/incremental mode)

#775 bpinsard opened 4 months ago
0
Converting large numbers of DICOM image produces no results

#774 kwunh opened 4 months ago
0
Fix metadata key

#773 xuanxu closed 4 months ago
1
[JOSS] FIX split names into given-names/surname/suffix

#772 mvdoc closed 4 months ago
1
Dicom to BIDS--Manual renaming Help!

#771 s-madhavan opened 5 months ago
0
Replace deprecated "_phase" suffix in reproin heuristic with "part-phase" entity

#770 tsalo opened 5 months ago
5
ReproIn heuristic uses `phase` suffix instead of `part-phase`

#769 tsalo opened 5 months ago
0
[ENH] add PlainAcquisitionLabel IntendedFor method

#768 octomike closed 5 months ago
3
populate_intended_for prefers `task` entity with `CustomAcquisitionLabel` method

#767 octomike closed 5 months ago
4
Remove grants from .zenodo.json for now

#766 yarikoptic closed 5 months ago
2
Revert "Add CITATION.cff validation to lint workflow"

#765 yarikoptic closed 5 months ago
2
Replace CITATION.cff with .zenodo.json for correct (split) affiliations on Zenodo

#764 yarikoptic closed 5 months ago
2
ReproIn name for siemens GRE fieldmap? one name in cockpit makes dicoms with two SeriesIds (mag and phase)

#763 WillForan opened 5 months ago
2
Codespell tuneup: no dedicated workflow (part of tox -e lint), and fix few freshly detected typos

#762 yarikoptic closed 6 months ago
2
[ENH] update_complex_name to handle real+imaginary complex data

#761 bpinsard opened 6 months ago
5
Specify license in CITATION.cff

#760 yarikoptic closed 6 months ago
2
Replace one rogue markdown [ref](url) to `ref <url>`_ RST

#759 yarikoptic closed 6 months ago
3
Add CITATION.cff based on JOSS paper.md

#758 yarikoptic closed 6 months ago
3
Fix typo

#757 asmacdo closed 6 months ago
3
Handle cases where dates/times in DICOM are empty strings, not Nones (e.g. after some anonymization)

#756 yarikoptic closed 6 months ago
2
fix code failure when dicom time fields are empty

#755 jennan closed 6 months ago
3