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Hello -
I'm experimenting with the phylogenetic PCA / PACA to analyze microbial communities. My datasets often have thousands of species. I have left gm.prcomp running for hours on what is actually…
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Hi Joey
Thanks for phyloseq, I find it very useful and recently published a paper which relied on it a lot.
I wanted to do CCA with environmental variables and ellipses to graphically highlight som…
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Hi, I got a Continuous value supplied to discrete scale Error when plotting NMDS with **trans_beta$plot_ordination()**, I think it's because I used the **plot_color**parameter, I do have some group in…
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I am using the **biplot.pcoa()** function to project the original variables (2 nominal and 1 continuous variable) of my dataset onto a PCoA plot and I am getting different results for the projection o…
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Should be making a PCoA plot
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There are a lot of places wed like to do some explaining for the computes. some things that come to mind immediately:
1. Tell people were using pcoa in beta div, and why and what it might be good or b…
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I'm running into trouble calculating unifrac distances in phyloseq. I keep getting the following message whenever I run the distance function with weighted or unweighted unifrac:
`Warning message: …
cwatt updated
4 months ago
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Hi @stephengold ,
I think there is a typo in the newly added feature in the following method:
https://github.com/stephengold/Minie/blob/master/MinieLibrary/src/main/java/com/jme3/bullet/PhysicsSpa…
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Hey again,
I was able to run this pipeline successfully with test and real data, but am running into an issue I can't solve with a new set of real data. Here is my command:
```
nextflow run mai…
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### Overview
We are encountering some issues in obtaining appropriate estimates of error rates; I believe these problems are coming from our new(-er) sequencing facility sending us fastq files contai…