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I've been playing with Sage recently, and love it! A few random questions all over the board:
1. If I wanted to split my giant mgf file into lots of little mgf files and have Sage run on each of th…
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**- Upload your log file**
(If a log
[log_2024-06-28_09-55-41.txt](https://github.com/user-attachments/files/16030806/log_2024-06-28_09-55-41.txt)
file hasn't been generated, go to the 'Run' tab i…
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> Hi Ralf,
>
> I tried the new features today and they seem to work. However, when I set more than one cpu in the config file, the process seems to get stuck in the multiprocessing step at the very…
RalfG updated
1 month ago
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While trying to compile for a .mzid file ([output.mzid.zip](https://github.com/user-attachments/files/16161788/output.mzid.zip)), the NullPointerException below occurs. Apparently because the "start" …
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Hello!
I am trying to analyse some BoxCar DIA files that were generated on a Thermo instrument (Eclipse). FAIMS was used but only at one CV. The isolation windows are non-staggered (see table), and a…
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Hi @picciama
I'm using Oktoberfest to generate a prosit library using a semi tryptic library of uniprot proteome. Here is the output including the error.
2024-02-06 08:43:03,224 - INFO - oktobe…
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I'm trying to compare the spectrum of a light, untagged peptide with the spectrum of its labelled counterpart tagged with a heavy isotope. I'm using the modified cosine score since it considers the ma…
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**Details**
I am trying to follow the protocol of Bae, J.W., Kwon, S.C., Na, Y., Kim, V.N., and Kim, J.-S. (2020). Chemical RNA digestion enables robust RNA-binding site mapping at single amino acid …
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**Describe the bug**
AlphaPept model is not available.
**To Reproduce**
```
(oktoberfest-env) tobiasko@fgcz-c-072:/scratch/cpanse/PXD028735/oktoberfest$ python -m oktoberfest --config_path spe…
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I am trying to run this variant peptide detection pipeline.
It worked without any error when i ran this pipeline within 2 proteome file.
But, when i ran this pipeline with 4 mzml files, pipeline sto…