lazear sage issues - Githubissues

lazear / sage

Proteomics search & quantification so fast that it feels like magic

https://sage-docs.vercel.app

MIT License

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issues

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Using Sage for HLA Peptides

#139 theGreatHerrLebert opened 5 days ago
1
Random questions regarding splitting mgfs, specifying charge states, multiple possible precursors....

#138 gsaxena888 opened 1 month ago
1
Unintuitive behaviour of the 'precursor_charge' setting in the .json config.

#137 MatteoLacki opened 1 month ago
1
allowed customised mass offset for open search?

#136 daichengxin opened 1 month ago
0
Add start and end positions in output matrix

#135 acesnik opened 1 month ago
1
Add glob::glob file expansion

#134 acesnik opened 2 months ago
3
Input handling guardrails and glob expansion

#133 acesnik opened 2 months ago
2
Decharged precursors and tolerance

#132 glormph opened 2 months ago
7
fatal runtime error: stack overflow

#131 picciama closed 2 months ago
1
[Feature Request] Sage output as a pepXML file

#130 sciordia opened 2 months ago
3
Segmentation fault (core dumped)

#129 colinliuzelin closed 2 months ago
1
TDF: Use spectrum index instead of precursor index

#128 RalfG closed 2 months ago
1
Sage TSV output notes

#127 douweschulte closed 3 months ago
4
How does the static modification work when the initial generation of fragments and peptides?

#126 Wonyeop closed 3 months ago
3
Search using parquet files

#125 prvst opened 3 months ago
4
Can't read mgfs with upper cases in path

#124 jens-decker-bruker closed 3 months ago
0
diaPASEF first tests

#123 KlemensFroehlich opened 4 months ago
5
thread panicked

#122 KlemensFroehlich closed 4 months ago
3
entrapment FASTA

#121 KlemensFroehlich closed 4 months ago
3
Notched search

#120 jspaezp opened 4 months ago
4
Fix to #117

#119 jspaezp closed 4 months ago
2
Differences between TSV and Parquet results.sage output

#118 RalfG closed 3 months ago
2
No IMS model ran mzML input

#117 patrick-willems closed 3 months ago
5
Bruker Support

#116 treitpeter closed 5 months ago
1
Support for Fragment-able Modifications

#115 FriedLabJHU opened 5 months ago
2
Feature request: move mod input, mod runner, mod output into sage_core

#114 neonelemental closed 5 months ago
10
Add support for mzMLb

#113 mobiusklein opened 5 months ago
7
Support for mgf

#112 ypriverol closed 6 months ago
2
Fix link to Picked group FDR in README.md

#111 MatthewThe closed 6 months ago
0
Feature request: peptide position information in results

#110 kabalak opened 6 months ago
1
feat: add MGF reader

#109 yujinjeong2 closed 6 months ago
2
.pin file not opening in percolator

#107 jordancurrie closed 7 months ago
4
Semi-enzymatic digests not completing?

#106 hbarsnes opened 7 months ago
1
FDR: Peptide_q-values above 1% and MS2Rescore compatible

#105 Guitou1 closed 7 months ago
5
Supporting MGF format

#104 yujinjeong2 closed 6 months ago
1
access modifier, debug and clone for sagepy

#103 theGreatHerrLebert closed 7 months ago
2
Interfacing Sage results to protein group FDR package

#102 MatthewThe closed 7 months ago
5
[FEATURE] Export matched fragment ions for rescoring & spectral library generation

#101 grosenberger-bruker closed 7 months ago
4
Python bindings for sage-core library

#100 theGreatHerrLebert opened 7 months ago
7
Unspecific HLA datasets

#99 karimwh closed 8 months ago
3
Feature: ims model

#98 jspaezp closed 5 months ago
9
Memory consumption for extremely large search spaces

#97 grosenberger opened 8 months ago
4
Making spectral library by searching GPF-DIA files with Sage and other questions

#96 k-p4 closed 8 months ago
2
Single charged precursors?

#95 patrick-willems closed 8 months ago
2
Closes #92 New semi-enzymatic function with new notation.

#94 FriedLabJHU closed 8 months ago
1
Closes #92 Adds semi-enzymatic cleavage

#93 FriedLabJHU closed 8 months ago
3
Semi-enzymatic peptide generation

#92 FriedLabJHU closed 8 months ago
0
Bruker tdf integration

#91 sander-willems-bruker closed 8 months ago
5
Restrict enzyme in multiple AA

#90 ypriverol closed 8 months ago
4
Is support for SILAC or reductive dimethylation quantification planned

#89 radusuciu opened 9 months ago
2