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I was asked to provide the COL Aves species in a taxonomic order, starting with Ostriches and ending with Passerines, e.g. as given by the IOC or Cornell lists:
https://www.worldbirdnames.org/new/cla…
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**Organizational Page**: [MetaSemantics](https://github.com/NCEAS/open-science-codefest/wiki/MetaSemantics)
**Category**: Data Science
**Title:** Techniques for adding semantics to your metadata
**Pr…
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I am trying to write phyloseq object into csv file but it shows error?
physeq_soil
phyloseq-class experiment-level object
otu_table() OTU Table: [ 67405 taxa and 27 samples ]
sample_da…
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I am using the code from this [stackoverflow post](https://stackoverflow.com/questions/28222179/save-dendrogram-to-newick-format/31878514#31878514) which converts a `linkage matrix` to `newick tree` s…
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One thing I just thought of while trying to describe the proposed tag to the NeXML team: if you look at Mike’s translation of the original TSS spec (https://github.com/OpenTreeOfLife/phylostylotastic…
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Sorry, haven't done much homework on this, but is there a OT API mechanism to supply a topology only, and get back matching clades that exactly match that topology?
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Hi @Pbdas
I ran `./pipeline/9_mptp_on_all_trees.py work_dir/2021-11-19_00/fmsan/` and I got following error on my terminal
WARNING: delimit was not compiled with libgsl. Likelihood ratio test …
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**Describe the bug**
When passing a tree drawn from a distribution generated with dnEmpiricalTree to treeAssembly (and providing a vector of branch lengths) then running an MCMC, some of the resultin…
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Hi, I've recently been interrogating the RF distance and established that it is not an excellent measure of tree distance, leading me to propose some alternatives ([paper](https://doi.org/10.1093/bioi…
ms609 updated
3 years ago
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In the text, you will find my comments. Please use Adobe Reader to see them
[NetRAX___Phylogenetic_Network_Inference.pdf](https://github.com/lutteropp/NetRAX/files/5519440/NetRAX___Phylogenetic_Ne…