danlwarren RWTY issues - Githubissues

danlwarren / RWTY

R We There Yet?

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Consider adding trankplots for parameters etc.

#183 danlwarren opened 3 months ago
0
combining revbayes and mrbayes tree chains

#182 igoryanovich opened 6 months ago
0
makeplot.treespace -> `panel.margin` is deprecated. Please use `panel.spacing` property instead

#181 pwkooij closed 1 year ago
2
Error in seq_len(n) for 1 out of 2 runs

#180 pwkooij closed 1 year ago
2
Identify split containing all tips by comparing lengths

#179 lukejkelly closed 2 years ago
0
Drop trivial split containing all tips in clade.freq

#178 lukejkelly closed 2 years ago
0
prop.part includes all tips as a split so ASDSF calculation is slightly lower than it should be

#177 lukejkelly opened 2 years ago
5
Merging in changes from other pull requests

#176 danlwarren closed 3 years ago
0
Merging changes across rwty2-rob and master branch

#175 danlwarren opened 3 years ago
0
Common node indexing across clade calculations

#174 lukejkelly closed 3 years ago
0
Nodes getting different labels in get.slide.freq.table for make plot.asdsf?

#173 lukejkelly opened 3 years ago
3
Error: couldn't find any trees; start:end : argument of length 0

#172 jbernst closed 3 years ago
2
error with pretty much any analysis function

#171 maRce10 opened 3 years ago
5
Alternative distance measures

#170 ms609 closed 3 years ago
0
Incorporating alternatives to Robinson-Foulds / path distances

#169 ms609 opened 4 years ago
7
Make treespace and associated plots N-dimensional

#168 danlwarren opened 4 years ago
2
Revert "Develop"

#167 danlwarren closed 4 years ago
0
Develop

#166 danlwarren closed 4 years ago
0
Convert tables in report to DT

#165 danlwarren opened 4 years ago
0
making gifs with magick is too slow

#164 roblanf opened 4 years ago
4
Adding alternative tree metrics

#163 MichelleKendall closed 3 years ago
0
Compare distributions of parameter estimates across chains

#162 danlwarren opened 4 years ago
0
Make cool tables with reactable

#161 danlwarren opened 4 years ago
0
plot appearance

#160 roblanf opened 4 years ago
1
add D from semivariogram to topological autocorrelation plots

#159 roblanf opened 4 years ago
0
remove makeplot.topology()

#158 roblanf opened 4 years ago
0
add ggmarginal to parameter trace plots

#157 roblanf closed 4 years ago
2
Rwty2 rob

#156 roblanf closed 4 years ago
2
add mcc tree to output in analyse.rwty()

#155 roblanf opened 4 years ago
0
increase the alpha on the splitfreq comparison plots

#154 roblanf opened 4 years ago
0
reduce sampling interval on topological autocorrelation

#153 roblanf closed 4 years ago
1
add titles to the burnin plots

#152 roblanf opened 4 years ago
0
compare rf.dist to multRF from phytools

#151 roblanf opened 4 years ago
0
use a proper logger

#150 roblanf opened 4 years ago
0
add progress bar for analyse.rwty()

#149 roblanf opened 4 years ago
0
add animations to analyse.rwty

#148 roblanf opened 4 years ago
0
ACSF and split frequency plots take a REALLY long time

#147 roblanf opened 4 years ago
5
pretty print chains object

#146 roblanf opened 4 years ago
0
transpose the ESS table in the output R markdown

#145 roblanf opened 4 years ago
0
add auto-finishing for nexus files

#144 roblanf opened 4 years ago
0
test MCC tree is accurate

#143 roblanf opened 4 years ago
0
test what happens when there's no 'LnL' column

#142 roblanf opened 4 years ago
0
add a global ess(chains) function

#141 roblanf opened 4 years ago
2
Fixing autoskip

#140 danlwarren closed 4 years ago
0
bug in auto burnin detection

#139 roblanf closed 4 years ago
1
Calculate global mcc tree

#138 roblanf closed 4 years ago
1
add mcc trees to treespace plots

#137 roblanf closed 4 years ago
1
bug in treespace plots

#136 roblanf closed 4 years ago
1
Autoskip

#135 danlwarren closed 4 years ago
0
Fixed minimum number of trees for topological.approx.ess

#134 danlwarren closed 4 years ago
0