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Many (most?) SDF files have the bond orders wrong - it's a downstream effect of the old data prep pipeline.
We can't fix the actual files - but this ticket is for the backend to fix them as it serv…
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Dear m6anet-team,
I have a question regarding m6anet, which I try to use in Galaxy to reproduce some RNA-sequencing study in order to get familiar with this topic.
In your manual you write for dat…
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Update, per log results below:
`meltano schedule run daily-run-all` is failing due to a failed `dbt-duckdb build` step.
Key error is `Table with name elo_post does not exist` here:
```
2022-…
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(XICRA) [mbansal@login004 teton1]$ XICRA prep -i ./teton1/ -o ./XICRA_Prep/ --debug
######################################################################
# XICRA pipel…
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This is a description of the code pipeline that should be updated regularly. Ideally, the whole pipeline will be run through the build.R file. I should also check [targets](https://books.ropensci.org/…
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**Describe the bug**
VM1 192.168.12.12:2021: Docker:
data-prepper running
VM2: Fluent-bit docker:
/fluent-bit/bin/fluent-bit -i cpu -t cpu -o http -p Host=192.168.12.12 -p Port=2021 -m * -p URI…
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i am seeing the error:
```
Error, cmd: bash -c "set -euxo pipefail; cat /refbuild/GRCh37/starfusion/../annotation/Homo_sapiens.GRCh37.75.gtf | egrep 'IG_V_gene|IG_C_gene|IG_D_gene|IG_J_gene' | awk '…
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I read with great interest your recent publication (https://doi.org/10.1021/acs.jctc.3c01421), and followed the README information to create the necessary environment for running your codebase. Howeve…
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Noah Knowles (nknowles@usgs.gov) was able to extract and create an excel file of 2000-2021 NYC daily reservoir diversions from pdf files. See the excel file [here ](https://doimspp.sharepoint.com/:x:/…
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I'm trying to evaluate graphrag-toolkit.
Just created the AWS resources and testing with provided source code in fresh new conda env with pip install found in doc.
Please note I checked apply() …