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The names of the experiments in the CDD vault/Manifold are being changed to new standardised names, we should support the new names in our CDD download process.
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For a while, it is possible to specify two enzymes, e.g. trypsin (KR) and gluC (E).
However, I could not find anywhere what Fragger would do in such a case:
- option A: digest the database with tryp…
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Please provide as much information as you can:
* **Suggested term label:**
* **Definition (free text)**
* **Reference, in format PMID:#######**
(REQUIRED)
* **Gene product name and I…
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Defining mutations:
JN.1.1 > C11747T > C21952T > S:R346S (A22600C)
Query: C11747T ,C21952T ,A22600C
Samples: 2 France
EPI_ISL_18569011, EPI_ISL_18577423
Tree:
![Schermata 2023-12-04 al…
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Hello
By working on the human autophagosome assembly GO-CAM model I realized that there were some issues with ATG8-related terms.
ATG8 family proteins are ubiquitin-like modifiers, however they are…
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Just to take note that one little but interesting node of XBB.1.9.1 is defined by S:L452R and ORF7a:V104L and it has been already found in US and Japan suggesting maybe a wider than seen circulation.
…
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+[Term]
+id: GO:0141177
+name: symbiont-mediated evasion of recognition by host innate immune effector
+namespace: biological_process
+def: "A process by which a symbiont mitigates the effects of …
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**Defining Mutations:** `FL.2` > `C25521T` > `T23485A(S:N641K), A29683T`
**Query:** `T23485A, C25521T`
**Earliest seq:** 2023-03-15 (`EPI_ISL_17363241`, England, UK)
**Latest seq:** 2023-07-13 (`EP…
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For the GO-PathGO alignment, we will
- [x] change the label of GO:0044542 'plasminogen activation in another organism' to GO:0044542 symbiont-mediated activation of host plasminogen
- [x] change …
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It's worth considering adding in an extra field for PubMed and CrossRef data to capture relations between preprints and articles.
|Source |ID Type |Article type attribute …