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ConsensusID results can be strongly negatively affected by suboptimal input data.
In an example, ConsensusID was used to combine search results from Mascot, OMSSA, X! Tandem and MS-GF+. The pipeline …
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# Describe the problem
* **I'm submitting a:**
- [X ] problem running the software
* **My MSFragger use case:**
- [ ] _Closed_ search (standard small precursor mass tolerance)
- [X] _Op…
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# Describe the problem
* **I'm submitting a:**
- [x] problem running the software
* **My MSFragger use case:**
- [x] _Closed_ search (standard small precursor mass tolerance)
** _put y…
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It would be valuable to update the Unipept workbench and the Unipept API with some tools for aggregating biodiversity identifications (may be extended later on with tools to aggregate functional ident…
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Hi;
We need terms for the following tools and their scores:
**MSFragger**
**PeptideProphet**
- peptideprophet probability
**ProteinProphet**
- proteinprophet score
- protein group …
prvst updated
5 years ago
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# Describe the problem
* **I'm submitting a:**
- [x] problem running the software
- [ ] bug report
- [ ] feature request
- [ ] question
* **My MSFragger use case:**
- [ ] _Closed_…
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# Describe the problem
I almost get equal numbers of 'real' (1509) and 'rev_' (1651) proteins in the final output file.
This seems to be traced back to the 'Mapped Proteins' column in the 'peptid…
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# Describe the problem
* **I'm submitting a:**
- [ ] problem running the software
- [X] bug report
- [ ] feature request
- [ ] question
* **My MSFragger use case:**
- [X] _Closed_…
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# Describe the problem
FragPipe / MSFragger crashes on number format
* **I'm submitting a:**
- [ ] problem running the software
- [X] bug report
- [ ] feature request
- [ ] question
…
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I read the paper "Informed-Proteomics: open-source software package for top-down proteomics", which mentions that MSPathFinder is a faster proteoform identification tool. But I don't know where I am o…