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This manage to run for run_wmean but run_viper encountered error
acts
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Hi,
I just wanted to first say thank you for building this package, it has been incredibly useful in helping me to analyze some mouse tumor data where simply looking at cluster markers wouldn't ha…
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Hello aertslab,
Wondering how can I compute regulon_specificity_scores to get cell type specific regulons in SCENIC? Is there a function like regulon_specificity_scores in pySCENIC?
![image](https:/…
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Hi,
I have inquires regarding a DoRothEA in R. The output shows the variable TFs once plotting the heatmap. I wonder how I am able to collect the list of corresponding regulons (TF targets) in each…
J1205 updated
2 years ago
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Hi,
I ran SCENIC on my single cell dataset (about 900 cells) twice, with a difference of 14 cells. However, I found there were considerable amount of regulons differing after I added these 14 cells…
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https://mp.weixin.qq.com/s/WvbszojyMMIoMus0smMy7g
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Hi everyone, i'm currently using SCENIC step2&3 for my research, and i'm puzzled about "extended" regulon. I guess that one regulon is a subset of its "_extended" regulon, and has a higher threshold o…
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https://mp.weixin.qq.com/s/pN4qWdUszuGqr8nOJstn8w
ixxmu updated
2 years ago
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Hi,
Do you have a tutorial for analysing the results of pySCENIC CLI in R. I have generated a loom file and I am trying to follow the tutorial here (https://rawcdn.githack.com/aertslab/SCENIC/0a4c…
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I have divided my cells into two sub-populations for which I have run SCENIC analysis independently. Can I directly compare RAS scores for a given regulon between two different runs (I know these may …