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Hello,
I am trying to use your library to load and read VCF file, my code is:
```
import vcf
vcf_reader = vcf.Reader(open('6788.vcf', 'r'))
record = next(vcf_reader)
```
I tried Py2.7 …
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When compiling with a core for SAMD11 by MattairTech (https://github.com/mattairtech/ArduinoCore-samd) I get:
```
In file included from C:\Users\Perigalacticon\Documents\Arduino\sketches\Function Te…
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Any chance this library will run on a SAMD11 MCU? (Trying to plan a project).
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I get the following error post-star alignment and during cufflinks transcript assembly:
...
196662 genes finished
Traceback (most recent call last):
File "/home/aadam/local/bin/bcbio_nextgen.p…
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```
Write out vds: gs://seqr-hail/datasets/GRCh38/1kg/1kg.liftover.vep.vds
[Stage 5:======================================================> (22 + 1) / 23]Traceback (most recent call last):
File …
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I've some problems to read Maf Files (Mutation Annotation Format) in R as follows:
> tmp.maf=read.maf(maf = "tmp.maf", removeSilent = TRUE, useAll = FALSE)
reading maf..
Mutation_Status not found…
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Hi,
I'm trying to use SEQLinkage (v.1.0) with a frequency file and I'm getting an error message:
```
seqlink --fam masto_up.ped --vcf masto_up.filt.recode.vcf.gz --freq ExAC.r0.3.1.sites.vep.vcf.…
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Looks like mattairtech already has done most of the work:
https://github.com/mattairtech/BOSSA/commit/fcf8a701af69d2821c84c025c72b36ecb6d0efd2
and it would be really awesome if this was in the officia…
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I just encountered a bug on a project that I traced to DualOptiboot.
The issue was that raw writes to the SPI pins (SK, MO, MI) were not working as expected in the main code. This only occurred on …
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Good morning!
Thanks for the excellent framework.
I wanted to extract all of the impacts for the mutations, including all of the transcripts affected.
It tried the query:
```
select v.chrom…