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Hello! I've been trying to use your software, but I only ever see global CNV changes - no hint of single cell changes.
I've tried changing the windows size between 1e5, 5e5, and 1e6, the minFrags …
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Hi,
Thanks for the wonderful and flexible package.
I created a heatmap object based on Complex Heatmap using ArchR. I need to re-order the columns and change the top annotation. The reordering…
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Hello,
is there are any plans to support numba njit?
Can be very useful.
```python
import numba as nb
import zarr
import numpy as np
@nb.njit()
def test(arr):
for i in range(arr.shape…
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Hello again
Sorry to bother you but I tried to run Scarlink with my own data this time (work perfectly with yours). I'm working on Rat samples, so I runned the preprocessing with a Rat GTF file (the …
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Hi, thanks for your wonderful tool to help adding the clonal resolution in single cell level. And I followed the tutorial in the Downstream analysis for Patient A.6 in clonal_inference/vignettes secti…
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Hi,
I encountered a problem when running **EpiTraceAge_Convergence** in the step 4 of the [tutorial](https://epitrace.readthedocs.io/en/latest/MSscATAC.html#step-4-epitrace-analysis). It seems to b…
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Hi there,
Thanks so much for creating this package. I'm in the processing for trying it for one of my samples.
I have bulk WGS and 10x scATACseq (also paired scRNAseq; outputs generated by cellrange…
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Is it possible to retrieve the imputed gene score matrix?
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I was wondering if you could explain what are the row names of the tilematrix?
I assume that it is the :
```
TileMatrix@elementMetadata
DataFrame with 6062095 rows and 3 columns
seqname…
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Hi GreenLeafLab,
I was trying to use SingleR package with a public dataset to annotate clusters. I use getMatrixFromProject() to get the GeneScoreMatrix. However when I try to use SingleR and it re…