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colomemaria
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epiAneufinder
R package to detect breakpoints and assign somies to scATAC-seq data
GNU General Public License v3.0
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More questions related to fragment file
#35
Krithika-Bhuvan
closed
8 hours ago
1
how to control number of sub-clones ?
#34
Krithika-Bhuvan
closed
8 hours ago
2
Issue related to 'zero windows remain'
#33
Krithika-Bhuvan
closed
5 days ago
3
How are "normal" cells defined in EpiAneufinder ?
#32
Krithika-Bhuvan
closed
1 month ago
4
CNV result confidence
#31
Jiawei-Xing
opened
1 month ago
1
Add Makefile and environment.yml for easier dependency management
#30
macelik
opened
2 months ago
0
Recommendations for window size parameter
#29
clee700
closed
2 months ago
2
Question about euploid samples
#28
emanuelavilla
opened
2 months ago
1
How to add labels in the Karyo plot？
#27
sjasws
opened
2 months ago
8
Issue with running progression
#26
idkaavan
opened
3 months ago
1
Only Identifies Global CNVs for scATAC data
#25
markphillippebworth
opened
5 months ago
16
Parameters for multiome data
#24
harrsha4
closed
3 months ago
3
Discussion: universal chr6 copy number gain
#23
bj-chen
closed
3 months ago
2
Issues with "Correcting for GC bias" step
#22
ngdog7
closed
6 months ago
8
Question related to publication
#21
Krithika-Bhuvan
closed
5 months ago
8
Problem while "Adding Nucleotide Information"
#20
BoxWong
closed
8 months ago
3
Size of chr2 and chr3 incredibly small for mouse data
#19
Urja25
closed
3 months ago
1
Running the program with SNU601 scATAC-seq data gives different result
#18
wjhlang
closed
8 months ago
6
having trouble with node stack overflow during the analysis
#17
BBBlanca
closed
10 months ago
6
calling copy numbers using only counts matrix
#16
Katherine-Kelly
closed
10 months ago
7
Script for plotting heatmaps
#15
Urja25
closed
1 year ago
0
Error: node stack overflow
#14
Urja25
closed
1 year ago
1
"Correcting for GC bias" does not finish after two days
#13
YiweiNiu
closed
1 year ago
2
Analyze X and Y sort issue
#12
priscilla-glenn
closed
1 year ago
4
Error in S4Vectors
#11
priscilla-glenn
closed
1 year ago
0
'mc.cores' > 1 is not supported on Windows
#10
priscilla-glenn
opened
1 year ago
1
Counting reads from BAM files: 'data' must be of a vector type, was 'NULL'
#9
mbuttner
opened
1 year ago
3
Get overall classification per cell (diploid vs aneuploid)
#8
ccruizm
opened
1 year ago
7
just a little sample in result_table.csv
#7
Nina-SingleCell
closed
1 year ago
1
using epiAneufinder in CUT&Tag
#6
nouroddinc
closed
3 months ago
1
Error: node stack overflow
#5
Laolga
closed
1 year ago
2
results_table.tsv rows are not the same size in multiple samples
#4
tinakeshav
closed
2 years ago
1
Problem about processing cores
#3
Larrycpan
opened
2 years ago
1
unable to find an inherited method for function "assays" for signature "standardGeneric"
#2
wangruohan111
opened
2 years ago
3
count matrix is empty and the execution crashes
#1
Laolga
closed
1 year ago
5