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Hi there,
I've got a few bacterial assemblies in which I determined some plasmid sequences. I therefore wanted to try out Unicycler to figure out whether it would be able to optimize my Illumina-on…
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Hi,
I am trying to run masurca_scaffold.sh using two pacbio assemblies generated from some other assembler. I am using main assembly (closest to the estimated genome size) as -r and another assembl…
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Hello,
I am using spades v3.14 in `--meta` mode. I got an error, these are the last lines in the log file:
```
2:34:39.146 46G / 105G INFO StageManager (stage.cpp …
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Dear,
Which file output from ribotin can be used for the next step of analysis to obtain complete rDNA assembly, and how to do it?
Thanks.
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A user reported errors fetching interfaces from the following structures.
```
1g5y 1hxy 1ldk 1ya5 2as5 2esv 2f8v 2gbj 2gbk 2gbm 2gbr 2io5 2k6d 2kjh 2rcj 2wdt 3dpr 3o65 3pml 3utt 3w0t 4amh 4csy 4dh…
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## Capture notes on the assembly process in an issue as I go.
This can be put into a README.md or other markdown document later.
This content will be good for the Hardware X article.
Note: These …
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Hello!
We are trying to build an index of C.elegans assembly graph and getting an error:
```
>> ./vg view -vF celegans_graph.gfa > celegans_graph.vg
>> ./vg mod -X 1024 celegans_graph.vg > cel…
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I’m looking for a tool that can convert the metaSPAdes assembly graph into a networkx or igraph object. Can this do that?
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Dear all,
We already have constructed a graph from six genomes (five newly assemblied genomes plus one backone reference). I want to focus on the non-backone references added in the graph. Can I us…
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Hi,
I ran hybrid assembly and under the "Assembling contigs and long reads with miniasm" process I got the error message "Speicherzugriffsfehler (Speicherabzug geschrieben)", I think in English it …