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Hello,
I am trying to run arcasHLA using the test commands provided on the git page but incur error:
traceback (most recent call last):
File "/arcasHLA/scripts/genotype.py", line 707, in
with …
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I am new to nanopolish.
I am using it on NIH Biowulf with the following modules:
1) singularity/3.8.5-1 2) guppy/6.1.2 3) seqkit/2.1.0 4) gcc/7.4.0 5) nanopolish/0.13.2 6) samtools/1.1…
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ultraplex is now installed on biowulf as a module ... did some testing.. it was able to demultiplex, quality trim and remove adapter (all in one step) for the 520+ milllion read fastq file (FlagRo1hr_…
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I am getting an error when running verkko and I am not sure what the problem is. Could you have a look at the log file and advise.
I did run the following code ```verkko -d analysis_results --hifi .…
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Hello there,
I just want to start off by saying thank you for creating and maintaining this amazing tool.
Would it be possible to update OpenCRAVAT so you can override the default modules direct…
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Running a cattle genome, I get the following errors:
```
MBG: src/UnitigResolver.cpp:2249: void maybeTrim(ResolvableUnitigGraph&, std::vector&, size_t, std::pair, size_t): Assertion `maxReadTrim
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Hi, I am trying to run sarek somatic pipeline with dummy tumor and normal sample present in sarek github repository : https://github.com/nf-core/test-datasets/tree/sarek/testdata/dummy
the sample s…
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Hi,
I'm having a new issue with generating methylation calls that's similar to a few issues others have described: i.e., exactly half of FAST5 reads are bad reads, the files are empty except for th…
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The proc script that results from using `-m_tedana` and `-combine_opts_tedana` does not have spaces separating the option arguments if you follow, the example. For example
```
-combine_opts_tedana -…
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snurk updated
2 years ago