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Currently inside the code that calculates a lot of observables we ask for ``SARAH`Vertex``. This is bad since it takes > 1s for every single call as the vertex has to be recalculated. Below is an idea…
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Apply native data IO for:
- init_pressure (use presure on edges)
- init_conc for DG
- transport models can read velocity field
- [ ] Fix FieldFE::fill_data_to_cache to write all dofs
- [x] ne…
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Thanks for your exciting work in dealing with the problem of multimodal imbalance. However, I met some troubles when running the code.
In `main.py`, the code for calculating entropy is shown below:
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So I did simple experiment where I grabbed random selections of atom pairs, then calculated the tica eigenvectors. They're pretty robust even with a small subset of atom pairs. This suggests that we…
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## What problem does this solve or what need does it fill?
You cannot at the moment have a mutable and an immutable reference to different mesh attributes at the same time. My specific use case tha…
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@nspope sent me this, which is a good core for a new tutorial on cross coalescence rates. Probably worth waiting until some of the core functionality (e.g. `rates_from_ecdf`) is implemented in _tskit_…
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CMC is currently taking a long time to compute, so long that for me it takes longer on dukemtmc to do validation than to calculate the epoch.
I noticed that CMC is currently single-threaded, is it po…
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Nice work, very thorough! Your functions seem reasonable, and the way you've laid it out would make it very neat and organized for implementing.
I like that you save the indices and reason for reje…
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Currently, we do PK derivation in frontend, but how to access schema and pk_indices in backend? There are two ways in our repo:
1. Pass the schema (and pk_indices) to backend node in `StreamNode::f…
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Hi there !
I want to calculate the RMSF only od the CA atoms in my DNA, but I cannot select them, even if this should normally be possible. I have checked my typing and tried out different combi…