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Automate AAI for multiple genome comparison. The out put can then be turned into gorgeous heat maps, heat map dendogram, or dendogram.
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h-clustering is a requested feature for heatmaps. This means sort the features by similar expression patterns in the different biomaterials.
I'd bet plot.ly has this as an out of the box feature, …
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Hi,
I have a couple of questions regarding the interpretability of the results obtained with UMAP. I apologize if the questions are too trivial and should be posted elsewhere.
> Third, UMAP of…
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We should add tests for the `Community` predictor. This is easier now that python-louvain is pip-installable (URL should be updated in the docstring as well).
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When dealing with higher amount of classes the visualizations are unreadable. Example: Dendrogram in Firefox:
![vocol_2018-05-02 09_46_48-analytics](https://user-images.githubusercontent.com/1275231/…
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Ik heb een aantal punten die voor mij nog niet helemaal duidelijk zijn. Misschien kunnen we die donderdag bespreken:
- [x] Hoe gaan we de OMI gebruiken --> nu gebruiken we alleen maar de [tabel ](…
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When the mouse is hovered over where dendogram branches splits, a "y: 0.134..." value is shown. I'm aassuming it's the mean of the distances between the two clusters. Is there any way to hide it?
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ghost updated
5 years ago
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myvocol.org/analytics
![vocol_2018-05-02 09_46_48-analytics](https://user-images.githubusercontent.com/1275231/39511477-e51ed20e-4ded-11e8-9798-e826e29cec63.png)
The visualization is shown incom…
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Is there a recommended way to reformat the dendogram plot if there are many time series? Mine is quite dense and hard to read. My code:
```python
im_name = 'pic.png'
cluster_model.plot(im_name, s…