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Earlier this month, I was contacted by [Wellcome Open Research](https://wellcomeopenresearch.org/) (which uses public post-publication peer review) about reviewing [the following paper](https://doi.or…
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Currently a mutation knows what node it happened over, but really it should know what edge it happened on. Conceptually, rather than storing the ``node`` ID, we should be storing the ``edge`` ID - the…
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**Submitting author:** @oschwengers (Oliver Schwengers)
**Repository:** https://github.com/oschwengers/referenceseeker
**Version:** v1.6
**Editor:** @will-rowe
**Reviewer:** @standage, @luizirber
**Ar…
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Some DOS installations present private and controlled access data. To make it easier for clients to find out the proper authentication credentials to use, add a `ServiceInfo` that offers a URL for log…
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**Submitting author:** @mlindsk (Mads Lindskou)
**Repository:** https://github.com/mlindsk/molic
**Version:** v1.0.0
**Editor:** @csoneson
**Reviewer:** @jdeligt, @jkanche
**Archive:** 10.5281/zenodo.…
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I'm working with small orgs so, not quite confident on how things should be working? Maybe you can provide some advice @cmdcolin
I've got an e coli genome (+ some relatives)
https://usegalaxy.eu…
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- [x] _A. ricciae_ The problem:
> Something is also wrong with the TE level for A. ricciae in figure 4 and main text, which is much lower than the other bdelloid rotifers – but they show similar le…
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I am trying to use VEP on bacterial genomes, largely for its ability to predict the consequences of indels. I have installed VEP Ensembl API version 96 on a workstation with Ubuntu 18.10 OS. Runni…
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Hi, I noticed that previous post #1715 have discussed this problem, I just want to know how to set the parameters in yaml file to support high-depth (about 2000x) panels covering tens of genes. First…
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This tool got my attention, because I hope it will make maintaining reference databases a lot easier.
I installed Ganon from this github repository and started to build a database (fungal genomes, …