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Figure 3 is missing from FullGenomeReport.html
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**Describe the bug**
Appears to be both a pandas 3.0 issue and a missing library. It doesn't produce a taxonomy either way.
**To Reproduce**
```
taxmyphage -i UP30.fsa -o UP30_out -p UP30 -t 8
…
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### Description of the bug
When providing several samples that should be mapped to different genomes in a samplesheet, the pairing between sample (group) and genome is ignored.
Expected behaviour…
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[23] clipcrop
######
# INPUT INFORMATION
# SAM FILE : 8.sam
# FASTA FILE : /usr/local/bin/ref/Homo_sapiens/UCSC/hg19/Sequence/BWAIndex/genome.fa
# JSON FILE : null
# OUT…
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Hello, thanks for sharing your code . I am very amazed by your work !
And I want to know where is this perl file .
```
/path/to/your/local/RepeatModeler-master/02_Ltr_and_classfier.pl
```
In my R…
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Thank you very much for making this software. I have a question: When I assembled the plant mitochondrial genome, I got a file named embplant_mt.K105.scaffolds.graph1.1.path_sequence.fasta. Can I use …
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Hello,
When attempting to run lumpy on NA12878 processing stops and it appears as though a core dump occurs.
Any suggestions?
samtools view -f 97 -F 28 /analysis/projects/myseq/gatk/v4/NA12878/bam//…
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## Summary:
Initially we are running a separate fastANI command for each pairwise comparison, meaning for 1000 genomes we would make a million command line calls and associated individual additions…
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Hi,
I am trying to run AMRFinderPlus on a set of phage genomes to annotate the AMR genes. I have the nucleotide FASTA file, and the protein FASTA and GFF files predicted generated using prodigal. …
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I have a question：
ERROR: BISER failed (-11):
[p] /public1/home/scb4191/miniconda3/envs/biser/lib/python3.8/site-packages/biser/exe/biser.exe search /public1/home/scb4191/Gall-aphid_genome/SDs_analy…