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Hello!
I am using cutadapt to demultiplex my reads (v2.10 with Python 3.7.6).
Basically, I have a pair of fastq files (e.g. input_R1_001.fastq and input_R2_001.fastq) which contain sequences fro…
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Hi,
I tested ALLHiC and SALSA2 with a diploid genome assembly(19 + XY) that is built from linked-reads (Pseudohap 1 style) and shows around 35kb of contig N50. and I found that the outputs are way di…
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### Steps to reproduce:
1.Navigate to the example page:
https://jsfiddle.net/kolaps33/1v34xwp6/15/
Example was done based on the aria example: https://www.w3.org/TR/wai-aria-practices/examples/…
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I use snakemake mostly for automating jobs on remote infrastructure. I pretty routinely find myself writing small (1-2 rule) workflows. At the moment, I have to spread the logic for these workflows ac…
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Hi, Im trying to use LEVIATHAN for linked-read data that has a long BXtag barcode sequence (36nt). Will this cause problems?
So far it seems I can successfully generate the LRez barcode index and LEV…
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Current kube logstream reads agent tokens from the K8s pod spec and then writes to the agent log endpoint. This has a few flaws:
1. The agent token needs to be readable by kube logstream, which means…
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**1. What were you trying to do?**
I'm trying to run the haplotype sampling algorithm to create a VCF of the resulting subgraph with vg deconstruct. I used the commands shown below based on (…
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Hi, in the README for the ONT-PromethION datasets (https://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/data/AshkenazimTrio/HG002_NA24385_son/UCSC_Ultralong_OxfordNanopore_Promethion/) under 'Data…
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Can something be done about it. I know on X it is a hard limit but can libxkbcommon be modified for allowing more than 4 keyboards on WL?
Thanks in advance.
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JAXB reads annotations directly from scanned classes by calling directly java.lang.Class.getAnnotation(Class) This means that Java classes must be annotated directly by e.g. @XmlRootElement, @XmlType …