genome-in-a-bottle giab_data_indexes issues

genome-in-a-bottle / giab_data_indexes

This repository contains data indexes from NIST's Genome in a Bottle project.

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Bed files information of WES data for AshkenazimTrio [HG002,HG003,HG004]

#33 poddarharsh15 opened 3 months ago
1
HG001 - Incorrect directory name for one of HiSeq 300X libraries

#32 Faizal-Eeman opened 5 months ago
0
what reference genomes used for generating cram files for s3://ont-open-data/giab_2023.05/analysis/hg*

#31 sahuno closed 8 months ago
1
Passage of GIAB samples

#30 NahyunKong opened 10 months ago
0
HG001_bam files information

#29 poddarharsh15 opened 11 months ago
1
MD5 checksum value error

#28 jberghout closed 11 months ago
1
Truth_set information for benchmarking

#27 poddarharsh15 opened 1 year ago
22
NA12878/HG001 Pacbio sequence links no longer working

#26 wac opened 1 year ago
1
NA12878 TruSeq references

#25 ZReplicant opened 1 year ago
0
De novo mutations

#24 gambalab opened 1 year ago
0
PromethION data de novo assembly?

#23 Samvkes opened 1 year ago
1
multiple primary records for same read group RMNISTHS_30xdownsample.bam

#22 nbedelman opened 1 year ago
0
filedate header in recent benchmark .vcf files is from 2016

#21 Samvkes closed 1 year ago
2
PacBio data download failed

#20 crazysummerW opened 1 year ago
1
MD5 checksums don't match for `HG002 Illumina 2x150bp`

#19 Faizal-Eeman closed 1 year ago
4
paired reads have different names

#18 Mahmoudbassuoni opened 1 year ago
11
Request for Information on Original VCF for Lifted Over VCF

#17 yueyaog closed 1 year ago
2
Strong coverage deviation for 1 of 13 subdirectories of NA12878 Illumina 300x WGS

#16 Jens-Pe opened 2 years ago
1
Raw PacBio subreads data

#15 PengNi closed 3 years ago
2
raw data between 30X and 40X and their truth VCF

#14 Talo07 closed 3 years ago
3
removed duplicated and trailing whitespace

#13 pickettbd opened 3 years ago
6
Update readme

#12 pickettbd closed 3 years ago
3
Incorrect link to PacBio CLR data for HG004

#11 AndrewCarroll closed 3 years ago
3
Add ID column to SV BED file

#10 SHuang-Broad closed 3 years ago
4
SRX accessions

#9 sinamajidian opened 4 years ago
1
Locations of Oxford Nanopore fast5 data?

#8 oneillkza opened 4 years ago
9
Bam index files for HG002 not working?

#7 joshuak94 closed 4 years ago
7
Data descriptions for newer data

#6 anands-repo closed 4 years ago
3
HG002 2x250 BAMs are double-covered by identical reads

#5 ctsa closed 5 years ago
2
Missing Bed files for Illumina Whole Exome by Oslo Uni. Hospital

#4 shexuan closed 4 years ago
7
trying to download chr22 subset with samtools

#3 splaisan closed 5 years ago
5
Missing BED files for exome fastqs

#2 vladimirkovacevic closed 4 years ago
4
The data links are changed by NCBI

#1 lihsing closed 7 years ago
2