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https://github.com/brain-life/app-mrtrix3-act/blob/dc1790de8e26dcaf4067ce57e7b8d437ed15adb4/mrtrix3_tracking.sh#L328
For example, when I asked for lmax = 6 and only lmax = 6, the code stalls at thi…
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I am trying to use pipeline for gene synteny between two genomes. After first step, It ended with the following error in step2:
Step2: run jcvi.compara.catalog ortholog
Step2: run jcvi.compara.catal…
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@jd-campbell had mentioned an interest in this project:
PRJNA996630
a preprint is here: https://www.biorxiv.org/content/10.1101/2023.08.15.553447v1
It looks like it's maybe just two tissues (l…
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Hello, thanks for creating such a useful tool!
I'm following the demo notebook, and I'm trying to run` b2c.scaled_he_image(adata, mpp=mpp, save_path="stardist_nash/he.tiff")` with a value of 0.5 f…
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_WARNING: long post below. I'm hoping to help us build a shared conceptual framework to guide ongoing API design, and given the underlying complexity and the number of different priors, don't know how…
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**Long Story Short**
The pdf export works the first time one clicks on the button, but is we add e.g. a visual and export again that doesn't work.
**Steps to reproduce**
1. Click on the button "E…
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Hi,
Thank you very much for putting together this package.
I have applied _scGate_ to 3 datasets: 1 human dataset, 1 _Arabidopsis_ dataset, and 1 corn dataset.
For the human dataset, I think …
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Rohlfing's experiment consists on registering 306 pairs of manually annotated MRI (IBSR) and measure the quality of the registration in terms of the average Jaccard index of each anatomical region. Ri…
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Results on all subjects for T1w images make much more sense! However, there are still evident outliers (mostly overestimated CSAs). Inspection of these outliers often show visible motion, poor definit…
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**Describe the bug**
I'm loading this dataset from 10X Xenium repo: https://www.10xgenomics.com/datasets/human-skin-data-xenium-human-multi-tissue-and-cancer-panel-1-standard
I load it based on the …