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sct-pipeline
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csa-atrophy
Evaluate the sensitivity of atrophy detection with SCT
https://csa-atrophy.readthedocs.io/
MIT License
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Merge final graph to branch for contrast-agnostic
#109
sandrinebedard
closed
2 weeks ago
0
Add badge pointing to RTD
#108
jcohenadad
opened
3 years ago
0
Implement torchIO for transformations
#107
PaulBautin
opened
3 years ago
5
README: mention version of spine generic dataset
#106
jcohenadad
opened
3 years ago
0
Add doc check in PR
#105
jcohenadad
opened
3 years ago
0
Automatic documentation with Sphinx and Read the Docs
#104
PaulBautin
opened
3 years ago
2
calculate CSA_mean_diff
#103
jcohenadad
opened
3 years ago
0
wrong doc
#102
jcohenadad
opened
3 years ago
1
would be nice to replace with latex equations inside readme
#101
jcohenadad
opened
3 years ago
1
Update ref to sample size computation in csa_rescale_stat.py
#100
PaulBautin
opened
3 years ago
0
Retrieve manual segmentations
#99
PaulBautin
closed
3 years ago
0
Update stats plots, add longitudinal sample size calculation
#98
PaulBautin
opened
3 years ago
6
Remove non-cropped transformed images
#97
PaulBautin
closed
3 years ago
0
Remove intermediate transformed images
#96
jcohenadad
closed
3 years ago
0
Draw bissection automatically on the graph
#95
jcohenadad
opened
3 years ago
4
Increase the dilation used for cropping
#94
PaulBautin
closed
3 years ago
1
Resampling images to 0.5 mm isotropic
#93
PaulBautin
closed
3 years ago
5
Add graph showing error in function of CSA
#92
PaulBautin
opened
3 years ago
1
Add image resampling resolution in config file
#91
PaulBautin
closed
3 years ago
0
resample t2w images to 1mm isotropic
#90
PaulBautin
closed
3 years ago
0
Crop around transformed segmentation
#89
PaulBautin
closed
3 years ago
4
Re-introduce padding in transformation
#88
PaulBautin
closed
3 years ago
2
Added graph showing intra-subject variability (COV) as a function of atrophy estimation error
#87
PaulBautin
closed
3 years ago
3
Add graph showing intra-subject variability (STD) as a function of atrophy estimation error
#86
jcohenadad
closed
3 years ago
6
Resample images to desired resolution
#85
PaulBautin
closed
3 years ago
2
CSA-atrophy pipeline scheme
#84
PaulBautin
closed
3 years ago
2
Visible outliers for T1w and T2w atrophy results
#83
PaulBautin
opened
3 years ago
13
Refactoring of affine_transfo
#82
PaulBautin
closed
3 years ago
2
Remove padding during transformaton
#81
PaulBautin
closed
3 years ago
0
Stat formula error in README
#80
PaulBautin
opened
3 years ago
0
Set config files to process t1w images
#79
PaulBautin
closed
3 years ago
1
Update link to data-multi-subject
#78
PaulBautin
opened
4 years ago
1
Set number of threads used in processing
#77
PaulBautin
closed
4 years ago
0
Compute Canada: inefficient use of the processors
#76
PaulBautin
closed
4 years ago
0
Resample disk labels
#75
PaulBautin
closed
4 years ago
1
Error: resampling of disk labels fails
#74
PaulBautin
closed
4 years ago
1
Freeze config files for processing on compute canada: graham
#73
PaulBautin
closed
4 years ago
2
Correction: run_all does not use OpenMP
#72
PaulBautin
closed
4 years ago
0
Improvement in CSA measures with T2w images
#71
PaulBautin
closed
3 years ago
5
Use manual segmentation only during labelling
#70
PaulBautin
closed
4 years ago
1
Underestimated CSA measures on T1w images after rescaling
#69
PaulBautin
closed
3 years ago
9
run_all doesn't seem to use openmp
#68
cfhammill
closed
4 years ago
1
Crop labeled images in process_data.sh
#67
PaulBautin
closed
4 years ago
8
Image containing manual labels is not cropped
#66
PaulBautin
closed
3 years ago
7
Revert "Reorient and resample manual labelling"
#65
PaulBautin
closed
4 years ago
1
add schematic to README
#64
PaulBautin
closed
4 years ago
1
Correct run_all.py log file path
#63
PaulBautin
closed
4 years ago
0
batch log output at the wrong location
#62
jcohenadad
closed
4 years ago
0
various improvements in run_all.py
#61
PaulBautin
closed
4 years ago
3
Reorient and resample manual labelling
#60
PaulBautin
closed
4 years ago
13
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