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sct-pipeline
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csa-atrophy
Evaluate the sensitivity of atrophy detection with SCT
https://csa-atrophy.readthedocs.io/
MIT License
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Error picking-up spine-generic/data-multi-subject manual labelling's
#59
PaulBautin
closed
4 years ago
2
Minor suggestions
#58
jcohenadad
closed
4 years ago
0
Break down OpenMP jobs across sub-datasets
#57
PaulBautin
closed
4 years ago
2
Break down OpenMP jobs across sub-datasets
#56
jcohenadad
closed
4 years ago
1
Remove function correct_pmj_detection() from manual_correction.py
#55
PaulBautin
closed
4 years ago
0
Update manual label file naming
#54
PaulBautin
closed
4 years ago
1
Correction of various issues after first large compute
#53
PaulBautin
closed
4 years ago
12
Profiling on OpenMP Compute Canada cluster
#52
jcohenadad
closed
4 years ago
5
Very large QC file
#51
jcohenadad
closed
4 years ago
0
Possible transfo file corruption due to parallel writing?
#50
PaulBautin
closed
4 years ago
7
pandas.errors.EmptyDataError: possible corruption due to parallel writing?
#49
jcohenadad
closed
4 years ago
2
FileNotFoundError: cannot find yml file
#48
jcohenadad
closed
4 years ago
2
error labelling
#47
PaulBautin
closed
4 years ago
2
Minor refactoring of process_data.sh
#46
PaulBautin
closed
4 years ago
1
Refactor management of transformation file
#45
jcohenadad
closed
4 years ago
1
Crop unnecessary parts of T1w images
#44
PaulBautin
closed
4 years ago
2
Refactoring of statistics
#43
PaulBautin
closed
4 years ago
2
Various refactoring
#42
PaulBautin
closed
4 years ago
0
Update link to data-multi-subject
#41
jcohenadad
opened
4 years ago
0
Use spine-generic manual correction
#40
PaulBautin
closed
4 years ago
0
remove branch release-- strategy for releases
#39
jcohenadad
closed
4 years ago
3
Correction of TODO list for branch release
#38
PaulBautin
closed
4 years ago
1
add flag -config in csa_rescale_stat
#37
PaulBautin
closed
4 years ago
0
underestimated inter-subject STD
#36
PaulBautin
closed
4 years ago
0
segment twice when rescale=1
#35
PaulBautin
closed
4 years ago
0
Submit manuscript
#34
jcohenadad
opened
4 years ago
0
fixes for manual correction
#33
PaulBautin
closed
4 years ago
2
Manual labelling correction
#32
PaulBautin
closed
4 years ago
7
Various improvements
#31
PaulBautin
closed
4 years ago
4
large dataset computing
#30
PaulBautin
closed
4 years ago
3
manual_labeling_correction with python
#29
PaulBautin
closed
4 years ago
0
Fetch dataset from Spine Generic
#28
PaulBautin
closed
4 years ago
6
Fetch dataset from Spine Generic
#27
PaulBautin
closed
4 years ago
1
Indicate user to fetch dataset from spine generic
#26
PaulBautin
closed
4 years ago
0
configuration yaml file
#25
PaulBautin
closed
4 years ago
10
Use contrast-agnostic soft segmentation to improve atrophy measure
#24
PaulBautin
opened
4 years ago
3
improve manual labeling correction script
#23
PaulBautin
closed
4 years ago
1
Centralize parameters in a config file
#22
PaulBautin
closed
4 years ago
1
package csa-atrophy
#21
PaulBautin
closed
4 years ago
3
package project with setuptools
#20
PaulBautin
closed
4 years ago
0
refactoring of affine transfo
#19
PaulBautin
closed
4 years ago
6
Transformations are cumulated, which adds unecessary interpolation errors
#18
jcohenadad
closed
4 years ago
0
Python requirements
#17
PaulBautin
closed
4 years ago
2
Improvements on stats and process_data
#16
PaulBautin
closed
4 years ago
8
implement random transformation
#15
PaulBautin
closed
4 years ago
1
Dataset versioning
#14
PaulBautin
closed
4 years ago
1
add docstring to functions
#13
PaulBautin
closed
4 years ago
5
minor fixes
#12
jcohenadad
closed
4 years ago
0
compute stat on different vertebra levels
#11
PaulBautin
closed
4 years ago
0
python packages
#10
PaulBautin
closed
4 years ago
0
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