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Hi WityBY:
I encountered a KeyError: 'pool_op_kernel_sizes' error when running nnUNetv2_train. Below is the detailed traceback:
Traceback (most recent call last):
File "D:\Code\Python\DLforLN…
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This was briefly mentioned during the last ivadomed meeting.
The inference script is a nice wrapper for nnUNet. It's hard to see how we could avoid duplicating it in model repositories, but it woul…
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您好！我想请问一下，在您的论文中我看到选择的是SGD作为Optimizer，我在使用的时候尝试使用Adam和AdamW Optimizer，但是没训练几轮loss就变成了NAN，不知道您这边有没有遇到过类似的问题，还是说就只是使用了SGD呢？
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Excellent work! Thanks for your open source spirit, it saves me a lot of time!
Could you provide the training code for nnUNet in the pre-training phase? Similar to "single_train.sh" and "voco_train…
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I trained the KiTS23 dataset using nnUNet, and the model with the best EMA pseudo Dice of 0.9035 has a "foreground_mean" Dice of only 0.45634453650219475 during inference. The inference results are ve…
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Opening this issue about subject `sub-edm019`. As we can see in the below image, the lesion is segmented in the brainstem while in our case we only focus on spinal cord lesion.
![Screen Shot 2023-…
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This issue summarizes experiments related to `Dataset602_DCMlesionsMultiChannel` (multi-channel model trained using T2w_ax and SC seg as input channels to segment lesions).
`dataset.json`:
```js…
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I downloaded the data as per the readme, but after unzipping it, it doesn't match the 801 dataset settings, the unzip ends in nii, not nii.gz, I tried to run `nnUNetv2_plan_and_preprocess -d 801 --ver…
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Hi Xinyi,
Thanks for your great work!
I met segmentation fault when I am trying to train D3D model.
The DCN is installed as follows:
Installed /scratch/users/rji19/.conda/envs/pytorch1.2.0/lib/pyt…
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I have understood how the nnunetv2 framework uses cpu inference, which is very convenient. But it seems that the nnunetv1 code can't set the device directly, do you know how to use cpu reasoning in th…