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## Project
The project aims at building a modular pipeline for *de-novo* bacterial assembly using nanopore reads.
Preliminary plan:
- adapter trimming using [porechop](https://github.com/rrwick…
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Hello, metawrap — really awesome tool it is. However, I have difficulty in doing downstream analysis to investigate complex questions about functional interactions and metabolic potential of individua…
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Hi everybody,
I am having an issue installing PROKKA, the error message is the following:
Can't locate Bio/Root/Version.pm in @INC (you may need to install the Bio::Root::Version module)
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Hello,
I have analyzed a collection of small pieces of DNA ~6100bp which only differs by a few basepairs in my collection. Using Roary and Prokka I identified 7 reading frames which range from ~100-1…
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Hello,
When executing the test script as in
```
$ PATH=$PATH:/home/moeller/git/med-team/mmmulti/plasmidid/bin TEST_DATA/test.sh || true
Executing:../plasmidID -1 KPN_TEST_R1.fastq.gz -2 KPN_TE…
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Hiya,
Me again. I've realigned my sequences to the reference genome so they are in order and re-ran, which appeared successful until I got these errors:
Error in log10(ldrollsub$compldfisub) …
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relevant to #309
I've been working on annotating catlases. In this use case, I built a "metapangenome" graph. I did a genome query (_R. gnavus_) in 605 gut microbiome metagenomes, and then combined…
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Hi!
I am trying to annotate some genomes from a custom database using --proteins and a gbk file with trusted annotations from an NCBI-annotated genome (let's call it X). However, some of the annota…
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In a previous commit, I fixed a bug related to the genbank character limitation of the locus tag that collides the sample name, scaffold and length.
> 'XXXXX_YYYYYY_229157' generated an exception: …
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Python 2.7 was introduced 14 years ago and was EOLed 4 years ago.
It is getting very hard to install metawrap and will get even harder when conda pulls the plug.