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Output DNA sequence does not always translate to the correct input protein to be optimized.
Reproducible steps:
Click Protein
Select E. coli, and select Yeast
Paste sequence:
MGSSHHHHHHSS…
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If any process can regulate another, and this is very often context dependent, why can we not record this using regulates relations in annotation extensions?
As far as I can see, this would fit nicel…
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Hi, thanks for the update have had great use of ColabFold so far!
Using the new multimer models I very often get a high amount of clashes that can be distracting while trying to look at interaction…
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When you start with the game it's hard to find some stuff. Found a berry? where is it?
Bought an Egg but can't find it.
You get used to it but all the Items are all over the place. Start menu, under…
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Hi,
Thanks for the useful tool.
I am currently uncertain about the optimal type of transcriptome files to provide for my study. I am considering two approaches: directly using StringTie/Trinity fo…
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eLife allows authors to include videos as primary assets in their articles.
## User Stories
### Author
- As an author, I want to be able to edit the title and legend for a video so that I can correct…
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This is me jotting down some thoughts on a feature that could be really useful to have in the future.
In InterMine, analysing genomic data involves creating multiple lists of genes/proteins and int…
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I'm looking to calculate iPTM for each pair of proteins in a given complex (using the below formula from the Alphafold-Multimer paper). Currently, the Colabfold version of Alphafold-Multimer only give…
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This issue is a follow-up to https://github.com/lgatto/MSnbase/issues/167.
@adder asked for user-defined locations of the Modification:
> You also have to be able to specify where the variable m…
sgibb updated
7 years ago
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Hi all!
I am having a weird behavior when i first load the electron density map setting boxSize=10. The map loads somewhere else in the scene. If I rotate the scene it stays uncentered. It shows co…