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https://mp.weixin.qq.com/s/y3drVOyPYgI5Cd2Y6QLTgA
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Hello aertslab,
Wondering how can I compute regulon_specificity_scores to get cell type specific regulons in SCENIC? Is there a function like regulon_specificity_scores in pySCENIC?
 in each…
J1205 updated
2 years ago
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Hi,
I ran SCENIC on my single cell dataset (about 900 cells) twice, with a difference of 14 cells. However, I found there were considerable amount of regulons differing after I added these 14 cells…
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Hi everyone, i'm currently using SCENIC step2&3 for my research, and i'm puzzled about "extended" regulon. I guess that one regulon is a subset of its "_extended" regulon, and has a higher threshold o…
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https://mp.weixin.qq.com/s/WvbszojyMMIoMus0smMy7g
ixxmu updated
2 years ago
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https://mp.weixin.qq.com/s/pN4qWdUszuGqr8nOJstn8w
ixxmu updated
2 years ago
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Hi,
Do you have a tutorial for analysing the results of pySCENIC CLI in R. I have generated a loom file and I am trying to follow the tutorial here (https://rawcdn.githack.com/aertslab/SCENIC/0a4c…
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Hi,
Are there any recommendations for comparing SCENIC results between samples (e.g. two single-cell datasets, run through SCENIC separately), other than comparing the heatmaps and clustering/tSNE?
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ocqub updated
2 years ago
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I have divided my cells into two sub-populations for which I have run SCENIC analysis independently. Can I directly compare RAS scores for a given regulon between two different runs (I know these may …