-
Hello,
is it possible to get the DiffDock to work for RNA also, assuming there is a training data set of know RNA-ligands.
Best,
Amir
-
O objetivo dessa atividade é transcrever uma sequência de DNA para RNA.
Crie um método que receba uma string contendo as letras abaixo e retorne uma string onde:
* C transcreve para G
* G transcr…
-
Hi,
I have a Target RNA Panel Sequence (Set of Genes are enriched) data. I have tried the OUTRIDER with default parameter, but I couldn't able get any aberrant expression even in known positive sampl…
-
I was able to finish running the example prediction (rf2na.sh, ../run_RF2NA.sh rna_pred rna_binding_protein.fa R:RNA.fa) with no error messages after compilation. However, I did notice that there is n…
-
Hi,
I am interested in studying protein-nucleic acid couplings, like that of transcription factors and RNA binding proteins. I was looking at the plmc script and was wondering how I should go about…
-
Hi,
I am aware that MACS2 is designed for finding peaks using ChIP-Seq data. However, when I run MACS2 on RNA-Seq data using default parameters, it seems to work as I expected. Now my question is d…
-
[ ] Add a slide on publicly available data, how to access it and how to clean it up (maybe share a script for clean up?)
-
Dear Peng,
I wonder if it is possible to use Deepsignal to detect methylations in RNA from samples sequenced by the direct RNA sequencing kit from ONT.
I think about training a model by using comp…
-
As of now only DNA can be simulated with a decent quality so that it will pass the ONT albacore quality filter. One of the next steps will be to fine tune simulation parameters to be able to simulate …
-
Hi, I want to assemble a final set of transcripts from multiple tissues, But I have a question. Should I first assemble transcripts for each sample, then merge the transcripts from the same tissue? Or…