uw-ipd RoseTTAFold2NA issues

uw-ipd / RoseTTAFold2NA

RoseTTAFold2 protein/nucleic acid complex prediction

MIT License

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issues

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Cut version tag

#115 JYlag closed 1 month ago
0
Minor update to network/util.py

#114 SuhasSrinivasan closed 2 months ago
0
UserWarning: Using torch.cross without specifying the dim arg is deprecated.

#113 SuhasSrinivasan closed 2 months ago
1
dimaio/new_config: Conda environment needs to be activated

#112 SuhasSrinivasan opened 2 months ago
0
Fix for errors in multiple scripts

#111 SuhasSrinivasan closed 2 months ago
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A solution for the package dependency issues 📦

#110 SuhasSrinivasan opened 2 months ago
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A solution for the package dependency issues 📦

#109 SuhasSrinivasan closed 2 months ago
0
UnboundLocalError: local variable 'is_ignore' referenced before assignment

#108 SuhasSrinivasan closed 2 months ago
3
make_rna_msa.sh: line 9: [: missing `]'

#107 SuhasSrinivasan closed 2 months ago
2
run_RF2NA.sh: Logging issues

#106 SuhasSrinivasan closed 2 months ago
2
A SOLUTION for Package Dependency Issues 📦

#105 SuhasSrinivasan opened 2 months ago
2
NVTX functions not installed

#104 SuhasSrinivasan closed 2 months ago
2
Regression: run_RF2NA.sh - R:RNA.fa No such file or directory

#103 SuhasSrinivasan closed 2 months ago
2
Downloading pre-trained weights

#102 kiernan1 opened 2 months ago
0
About whether RoseTTAFold2NA can generate multiple models?

#101 April-Zhangjq opened 2 months ago
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Update config

#100 fdimaio opened 3 months ago
0
Cannot load Graphbolt C++ library

#99 SuhasSrinivasan closed 2 months ago
2
Error: (803.7) [makeblastdb] Blast-def-line-set.E.title

#98 William-chen777 opened 3 months ago
0
Please provide pre-processed files for RNA

#97 SuhasSrinivasan opened 3 months ago
0
reprocess_rnac.pl - Out of memory

#96 SuhasSrinivasan closed 3 months ago
1
Can RoseTTAFold2NA predict the complex of several protein chains with DNA?

#95 BelyaevaJuly opened 3 months ago
0
How to solve error : PackagesNotFoundError: The following packages are not available from current channels

#94 yunsangk opened 3 months ago
1
Add pytz and torchdata to requirements.txt

#93 MatthewPace98 closed 2 months ago
2
../input_prep/reprocess_rnac.pl id_mapping.tsv.gz rfam_annotations.tsv.gz # ~8 minutes

#92 rse-lbl opened 3 months ago
3
Test run_no output model

#91 hummmmv opened 4 months ago
1
Discrepancy in Size of nt Dataset Downloads: Direct Link vs. update_blastdb.pl Command

#90 ShuZishan opened 4 months ago
1
Does RoseTTAFold2NA model the phosphorylated amino acids?

#89 Wenhao-Jin opened 5 months ago
0
makeblastdb errors when generating RNA data base

#88 vcojocaru opened 5 months ago
1
Can it run with DNA or RNA modification?

#87 IvanWoo22 opened 5 months ago
0
Apptainer Def File

#86 w34sel opened 5 months ago
0
Error in Prediction of RNA structure with Protein

#85 didEldi opened 5 months ago
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MSA error when running prediction with short poly-U RNA

#84 mvorlander opened 5 months ago
1
Cannot find 22:32:35.465 /RF2NA/bfd/bfd_metaclust_clu_complete_id30_c90_final_seq.sorted_opt_cs219.ffdata

#83 BrandonFrenz opened 5 months ago
2
The example DNA fasta file is missing.

#82 BrandonFrenz opened 5 months ago
0
Irreproducible conda environment from yml file

#81 pottsj21 opened 5 months ago
0
The 3D structures of Cis-BP

#80 takahh opened 5 months ago
0
UniClust 30 Database URL Broken

#79 ExactMoose closed 5 months ago
0
Protein/RNA prediction taking too long

#78 tanmoyp635 opened 6 months ago
1
Update README.md: cd up one level after installing S3Transformer

#77 ita-infiniplex closed 3 months ago
0
CUDA error: CUBLAS_STATUS_INVALID_VALUE

#76 denizkavi closed 6 months ago
1
where is update_blastdb.pl ?

#75 JiayouZhang closed 6 months ago
3
Update make_rna_msa.sh

#74 w34sel closed 6 months ago
0
Memory alocation error.

#73 tanmoyp635 closed 6 months ago
0
Test run_RF2na.sh for DNA and RNA Error - missing a3m files

#72 mackevinbraza opened 7 months ago
9
Updated installation description files

#71 gefei-qian-nih opened 7 months ago
0
example file not include DNA file

#70 bioone opened 7 months ago
0
Run on CPU without cuda/NVIDIA?

#69 stianale opened 7 months ago
1
make_rna_mas.sh error

#68 MrGao1997 opened 7 months ago
5
Databases path pointer different than suggested in the README

#67 fglaser opened 7 months ago
3
An error when download dataset

#66 MrGao1997 opened 7 months ago
0