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uw-ipd
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RoseTTAFold2NA
RoseTTAFold2 protein/nucleic acid complex prediction
MIT License
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Strange prediction results
#65
tryptos
opened
7 months ago
0
Data Training Cut-Off Date for Version 0.2
#64
i-l-sokolov
opened
7 months ago
0
Install problem: Use of uninitialized value $curl in concatenation
#63
Takk522
opened
8 months ago
1
Training split?
#62
nboyd
opened
8 months ago
1
the weired structure of double strand DNA
#61
Qmi3
opened
8 months ago
2
Issue when running on GPU
#60
retiro
closed
10 months ago
1
Clean the MSA to remove non-standard bases
#59
akashbahai
opened
10 months ago
0
PDB templates
#58
bifxcore
opened
11 months ago
0
Assertion Error
#57
akashbahai
opened
11 months ago
4
Issue with using BLAST
#56
huangtinglin
closed
11 months ago
2
Add support for making single-sequence RNA structure predictions
#55
amorehead
opened
11 months ago
0
How to handle case where no RNA families are found
#54
amorehead
closed
11 months ago
1
Which parameter represents how tightly the protein binds to the nucleic acid?
#53
FeiLiuEM
opened
11 months ago
0
Make FASTA filepath/type parser work with absolute FASTA filepaths
#52
amorehead
closed
3 months ago
0
Fix typo in README.md
#51
amorehead
closed
1 year ago
0
Usage of PR tag is unclear
#50
bifxcore
opened
1 year ago
2
ERROR: failed to load model
#49
GoldEagle93
opened
1 year ago
3
Issues with RNA multiple sequence alignment
#48
TheBil99
opened
1 year ago
7
Training data
#47
smilenaderi
opened
1 year ago
1
numpy 1.24 breaks the code
#46
yoavatsmonraz
closed
1 year ago
3
April23 updates
#45
fdimaio
closed
1 year ago
0
Typo:cmpress->compress
#44
StevenAZy
closed
1 year ago
0
perl oom program kiiled
#43
AAVwhit
opened
1 year ago
2
Usage of Uniref30 version
#42
what-is-what
closed
1 year ago
1
RoseTTAFold2NA Google Colab
#41
AAVwhit
opened
1 year ago
5
RuntimeError: CUDA out of memory.
#40
akashbahai
opened
1 year ago
8
RoseTTAFold2NA support multi-chain PDB output
#39
lipan6461188
closed
3 months ago
2
makeblastdb show add '-parse_seqids' option.
#38
lipan6461188
opened
1 year ago
1
Solving environment hangs on Ubuntu 22.04
#37
ronboger
opened
1 year ago
2
Get errors "NVTX functions not installed. Are you sure you have a CUDA build?" when run RF2NA on CPU.
#36
Wenhao-Jin
opened
1 year ago
20
run_RF2NA.sh :: option to set CPU and MEM requirements
#35
EricDeveaud
opened
1 year ago
0
File Sizes
#34
DuganLJ
opened
1 year ago
1
installation problem, what is wrong ?
#33
KatjaM2020
opened
1 year ago
14
"No hits satisfy inclusion thresholds; no alignment saved" for example files.
#32
MikekyT
opened
1 year ago
2
Clamp b-factors to 100 for writepdb
#31
blake-riley
closed
1 year ago
1
B-factor column all 1.0 with model, no pLDDT in PDB file?
#30
blake-riley
closed
1 year ago
0
How to choose GPU for execution?
#29
Phage-structure-geek
opened
1 year ago
1
Unresolved references, network/loss.py not used
#28
redsphinx
opened
1 year ago
4
RuntimeError: Class values must be smaller than num_classes.
#27
adimil
opened
1 year ago
8
C3' used as end axis for delta torsion
#26
jamaliki
closed
1 year ago
0
minimization of rna/protein outputs in rosetta
#25
abazabaaa
opened
1 year ago
0
_spherical_harmonics.py error when running example
#24
fafnir31
opened
1 year ago
1
Strange output when running example
#23
hnisonoff
opened
1 year ago
1
Run RNA prediction error
#22
lj734999889
opened
1 year ago
0
The error to predict the protein and RNA structure
#21
lj734999889
closed
1 year ago
1
The maximum number bases for double-stranded DNA
#20
Lyang556
opened
1 year ago
0
A bug in make_rna_msa.sh
#19
HeJonghong
opened
1 year ago
3
typo `../run_RF2NA.sh t000_ protein.fa R:rna.fa`
#18
truatpasteurdotfr
closed
1 year ago
1
Downloading the RNA database according to README instructions
#17
smturzo
closed
1 year ago
1
RNA connected to end of protein
#16
jchap136
opened
1 year ago
3
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