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I am currently using `vg map` to map reads from a yeast strain to my vg graph using the following command:
`vg map -if NCYC1006_trimmed_sorted_interleaved.fastq -x wholegenome.xg -g wg.gcsa > ncyc100…
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Hi,
Is there a way to use the ClusterNodeGenerator on a list of graphs?
Thanks,
-David
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@SalvoVirga @marcoesposito1988 @gavanderhoorn @tdinesh @rkojcev @adeguet1 @haudren @gergondet
# robot structure, states and commands
**Goal:**
Define new messages, or determine the correct e…
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Dear all,
When comparing graph genome and linear genome in short reads mapping, I found that graph genome did not improve the short reads mapping. Has this phenomenon also occurred in your side? Fu…
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The "IPLD/IPFS data importers project" is a group of tools and ipld data structures to represent all sorts of stuff (various kinds of files, archives, databases, datasets, etc.). The general point is …
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Some of the benchmarks don't do much and should be deleted.
Candidates for deletion:
```
fibcall
gdb-*
lcdnum
prime
ns
```
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Hi!
I am using inStrain in gut mouse microbiome samples. I compared nucleotide diversity and number of SNVs of every MAG and I observed that in most of the cases a decrease of π, more SNVs detecte…
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Hi,
Is it possible to delete nodes from a graph, then remap reads to it?
If so, could I have small snippet showing how?
It's not clear to me which fields I need to update when I delete a node.
…
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**Dmitrii** Should we replace algorithm in vg code or implement it as standalone command line utility?
**Erik** Implementing solutions in vg is beneficial now, but we also want to support an ecosyste…
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**1. What were you trying to do?**
I am using the vg tools to construct graphs and genotype SVs on multiple samples. While I don' t know the actual running time and memory for each command.
I us…