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### What happened?
The pipeline is terminating with an error when running the command with --threads specified higher than 4
I am running it on a 16 CPU VM on our cluster, and would like to take adv…
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I had a question about contamination and strain heterogeneity. I ran CheckM on around 500 bins from a metagenome. The contamination ranges from 0 to 870.28, and the strain heterogeneity ranges from 0 …
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Hello,
I've tested the new ANI screen method, using the mash DB, for `classify_wf`.
I've observed that I am missing a few genome at each run as well as the summary output `gtdbtl.ar53.summary.ts…
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Tracking updates of www.redditgifts.com
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Hello,
We are working with a set of 300 bacterial genomes of specific species. We want to define a core set that we can use to describe these species. So it is important for the definition to be as…
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# Bactopia v3
I am making progress towards a version 3 release of Bactopia (🥳). This version of Bactopia is going to introduce some fun an exciting things, but at the same time its going to break …
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### What happened?
Hi,
I have been trying to get this workflow to run for awhile with no success. When attempting to run the workflow on demo data it rapidly fails and produces a "stops with err…
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Hi,
I have just iinstalled Gtotree on a HPC using conda.
After running gtt-test.sh, I get the following output (below). I guess it is some kind of connection issue because there are multiple er…
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Dear Francisco,
I'm a PhD student from University of Groningen, focusing on host-gut microbiome interaction in HIV infection.
Recently, I am trying to use MetaGEM to answer my study hypothesis 🐬.…
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hi,I ran into some problems when I ran bactopia using docker, as follows:
(bactopia) root@6f9443c7a667:/# bactopia --R1 /home/fastqs/43_HQ_R1.fq.gz --R2 /home/fastqs/43_HQ_R2.fq.gz --sample kp43 --…