issues
search
epi2me-labs
/
wf-bacterial-genomes
Small variant calling for haploid samples
https://labs.epi2me.io/
Other
26
stars
8
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
alignment.bam output file seems to be missing
#48
irc47
opened
1 day ago
2
failed to run demo data
#47
xiranli007
closed
3 weeks ago
3
Bacterial genome wf "Stopped with error"
#46
AnjaliSM22
opened
1 month ago
1
Pipeline failure from process 'calling_pipeline:makeReport"
#45
forty2wallabyway
closed
6 days ago
8
can only analyse one barcode at a time
#44
nrt94
closed
2 months ago
1
Can unclassified bams from basecalling which could not be demultplexed, be of some use in reference based assembly
#43
jibrantahir
opened
3 months ago
0
From basecalling to error correction (Fastq to Fasta) as input to wf-bacterial genome
#42
jibrantahir
opened
3 months ago
0
wf-bacterial-genomes workflow not working
#41
bunnu27
closed
3 months ago
2
Error executing process > 'calling_pipeline:medakaNetwork (1)'
#40
ycuesta
opened
4 months ago
5
Help? Error running nextflow run epi2me-labs/wf-bacterial-genomes –-help
#39
greytear
closed
4 months ago
5
Script compilation error on test dataset
#38
jdiazsupsi
closed
5 months ago
2
Flye circular prediction
#37
VICTO160
closed
1 week ago
3
wf-bacterial-genomes stopped with error
#36
liatslu
closed
3 months ago
3
Collapse contig coverage graphs
#35
adbeggs
opened
5 months ago
1
Basecalling options not included in basecaller.cfg.
#34
YoungMunLEE
closed
3 months ago
2
Failed to pull singularity iamge
#33
adbeggs
opened
7 months ago
1
Output improvements
#32
fraser-combe
closed
7 months ago
1
Sample name not included in consensus fasta file
#31
avantonder
opened
7 months ago
2
Add option for bandage plots in report
#30
osilander
opened
8 months ago
1
Error with Demo data
#29
kiranpatil222
opened
8 months ago
9
Demo data Error: [E::fai_build3_core] Failed to open the file ref.fasta.gz
#28
kiranpatil222
opened
8 months ago
7
Information about circular contigs
#27
frumencelab
closed
1 week ago
2
Does the pipeline have internal error correction?
#26
weishwu
closed
8 months ago
1
Dorado models v4.3.0
#25
lagphase
closed
3 months ago
2
--profile standard should have one dash
#24
osilander
closed
5 months ago
2
bakta instead of prokka
#23
splaisan
closed
5 months ago
3
failing to run test_data
#22
splaisan
closed
1 year ago
3
failing the test_data run
#21
splaisan
closed
1 year ago
9
Workflow execution completed unsuccessfully! Error executing process > 'calling_pipeline:medakaNetwork (2)'
#20
Lenfera
closed
6 months ago
5
Workflow execution completed unsuccessfully! Error executing process > 'calling_pipeline:medakaNetwork (2)'
#19
Lenfera
closed
1 year ago
1
Different result from flye 2.9.2
#18
Yoon90
closed
1 year ago
1
Got "No disjointigs were assembled" error when running denovo
#17
bsalehe
closed
1 year ago
1
Use `-profile docker` instead of `-profile standard` when using Docker
#16
tavareshugo
closed
1 year ago
3
r1041_e82_400bps_sup_v4.2.0 missing from basecaller options
#15
WolfgangSchmied
closed
1 year ago
4
[Question]: no gbk output files for the newest version?
#14
lagphase
closed
1 year ago
3
[Bug]: error executing process 'calling_pipeline:run_isolates:processResfinder'
#13
samuelmontgomery
closed
1 year ago
7
[Bug]: Pipeline terminates with error when specifying more than 4 --threads
#12
samuelmontgomery
closed
1 year ago
2
Medaka model for dna_r10.4.1_e8.2_260bps_sup ??
#11
lagphase
closed
1 year ago
4
[Bug]: Failed to build prokka singularity image
#10
thanhleviet
closed
1 year ago
0
[Bug]: Error in checking FASTQ and Script
#9
phongphak
closed
1 year ago
2
[Bug]: Problem with Metaquast-part of report
#8
lknegendorf
closed
1 year ago
2
[Bug]: program doesn't run
#7
matteo1313
closed
1 year ago
2
[Bug]: No VCF file output?
#6
morgansobol
closed
1 year ago
2
workflow fails with demo data
#5
baynec2
closed
1 year ago
6
[Bug]: Report not taking top hit of 16s quast blast
#4
cjalder
closed
1 year ago
1
demo Workflow has terminated but no outputs are available
#3
asogg
closed
1 year ago
2
SyntaxWarning: "is" with a literal. Did you mean "=="?
#2
awh082834
closed
1 year ago
1
Medaka Model
#1
llk578496
closed
1 year ago
2