-
`cbScanpy -e filtered_gene_bc_matrices/hg19/matrix.mtx -o scanpyout -n pbmc3k cd scanpyout cbBuild -o ~/public_html/cb -p 8888`
appears to be missing a `;` before `cd`
-
Hi Max,
I'm receiving an assertion error when attempting to build a browser. I didn't receive errors when I generated the cellbrowser.conf file using a Scanpy object. I also double checked the Scan…
-
I'm probably not seeing something very simple:
https://scanpy.readthedocs.io/en/latest/api/scanpy.external.html#module-scanpy.external
renders fine whereas
https://scanpy.readthedocs.io/en/latest/a…
-
Hi
There's a great browser viewer for single-cell RNA-seq data, UCSC cell browser: https://github.com/maximilianh/cellBrowser
It creates a bunch of static files for each dataset, which can be serv…
-
Similar to #35, running the example build command throws an error. Here's the traceback:
```python2
Traceback (most recent call last):
File "../../src/cbBuild", line 9, in
cellbrowser.con…
-
Running into an error when attempting to build a viewer with sample dataset in sampleData/sample1.
Traceback (most recent call last):
File "../../src/cbBuild", line 10, in
cellbrowser.conv…
-
When running cbBuild like this `cbBuild -i config-file -o output` on a directory:
```
ls -l
total 2040
-rw-r--r-- 1 root root 157 Sep 17 14:09 config-file
-rw-r--r-- 1 root …
pcm32 updated
5 years ago
-
Execution as described in #24 fails with the following error:
```
2018-09-17T20:44:07.682197743Z INFO:root:/export/database/job_working_directory/000/32/working/summary.html does not exist
2018-0…
pcm32 updated
5 years ago
-
Hi there,
For some reason the datasets I have been using with cellbrowser since a month or so ago stopped
working for us with the following error when running cbBuild (using v0.2):
```
2018-0…
pcm32 updated
5 years ago
-
When I load the example dataset, I can click on the named clusters ('OPC', say) and a new window opens up ('Cluster markers for OPC') but the gene list never fills.
Is there something I should run se…