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I have gotten a sense from other users that the heatmap is the slowest plot to generate for various datasets. As such, I should benchmark various parts of the heatmap process (dataframe prep, the clu…
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Hi @juba,
I really like books-html to render my Quarto documents, especially the possibility to have dark mode (and to toggle between light and dark). That’s just… great!
One question I have is…
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---
Author Name: **Ed Brignole** (Ed Brignole)
Original Redmine Issue: 257, https://emg.nysbc.org/redmine/issues/257
Original Date: 2010-03-26
---
Hierarchical clustering fails on guppy during de…
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Two questions RE: DoHeatmap
1. Is there a straight-forward way to re-order the cells by their level of feature expression (e.g. re-order the plot below by decreasing GFAP expression left-to-right? …
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## Short description of the problem
The anvi-interactive is not working in my computer.
## anvi'o version
```
anvi-self-test --version
```
Anvi'o .......................................…
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It looks some data can not generate "NGSCheckMate.pdf" file, but it can be configured as optional file.
ERROR ~ Error executing process > 'NGSCheckMate'
Caused by:
Process `NGSCheckMate` term…
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## Due date
Apr 14
## ToDo
- Feature Engineering
- [x] Create RFM cluster using 3 features.
- [x] Sampling 5000 records to compare 3 models.
- [ ] Explain how we created each feature i…
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https://mp.weixin.qq.com/s/G1IMM1yZnxpeEYvWhBUsbw
ixxmu updated
2 months ago
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Hello,
I have a phyloseq object that I obtained with the dada2 pipeline. I would like to cluster those ASVs into OTUs. For that, I have the following code (just the start of it):
```
clusters
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Hi. I assume that the Hierarchical Clustering Dendogram is to be used as an attractive and convenient version of hierarchical clustering, whereas the Hierarchical clustering method gives a choice of s…