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I have all of my data in tab-separated files that import into pandas. I want to try and use some of the methods in the `Artifact API` to speed up my workflow instead of running the separate modules o…
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Hi there,
The preprint for Distanced - https://www.biorxiv.org/content/biorxiv/early/2018/09/24/423186.full.pdf - has just been released.
Big take-home message on their benchmarking is that DADA…
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In your statistical_testing analysis, following IRS normalization, the result of the decide tests function looks you might be overfitting your data.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC46…
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Hi there
First of all, thanks for developing such a useful tool and supporting moFF with Import2MSnSet.
I am trying to set up a quantification pipeline using the Compomics workflow (searchGUI, p…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/miaozhun/DEsingle
Confirm the following by editin…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/Stat-Li/SDAMS
Confirm the following by editing ea…
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I am trying to create a data matrix with labels as instructed in the latest version of the "ropls: PCA, PLS(-DA) and OPLS(-DA) for multivariate analysis and feature selection of omics data", which use…
ghost updated
6 years ago
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Hi:
I submitted a manuscript in which 16S analysis was performed exclusively with DADA2. I used the output to generate a table with the same format of an OTU table and inputted this into QIIME for …
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Hello,
I am trying to understand what the values are that are being reported in logFC after using fitFeatureModel. My code is below.
I have a metagenomeSeq object called Park_ShenCat that looks like…
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Dear Aaron,
In addition to an issue with binning, I am also having a problem regarding the plotFoldEnrichment function. I have attached both the code and associated plot for both counts and combina…