HCBravoLab metagenomeSeq issues

HCBravoLab / metagenomeSeq

Statistical analysis for sparse high-throughput sequencing

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issues

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Package at risk for deprecation and removal from Bioconductor

#92 lshep opened 4 months ago
1
diff abundance after aggTax

#91 JHBI115 opened 8 months ago
0
没找到使用方法

#90 pangao1990 opened 8 months ago
0
quantitative metabarcoding no NORMALIZATION

#89 csmiguel opened 9 months ago
0
Package in danger of deprecation on Bioconductor

#88 lshep opened 10 months ago
0
cumNormStat(lungData) not equal to 0.7014946.

#87 tillea opened 11 months ago
2
Various typos in references and vignette

#86 krlong68 closed 4 months ago
0
fixed typo in reference title

#85 krlong68 closed 1 year ago
0
metagenomeSeq for denovo assembled contigs and creating the MRexperiment object

#84 josephhughes closed 1 year ago
1
Error when using a matrix in cumNormStatFast()

#83 kivanvan opened 1 year ago
0
correlation multitest correction

#82 tonyjhlam opened 2 years ago
0
continuous variable test

#81 Ivy-ops opened 3 years ago
1
Model subject ID in differential analysis using fitFeatureModel

#80 K-Pimentel opened 4 years ago
0
#Error in (function (classes, fdef, mtable) : unable to find an inherited method for function ‘assayData’ for signature ‘"fitZigResults"’

#79 DitteOL opened 4 years ago
9
Function to convert old result to new result class

#78 hcorrada opened 4 years ago
0
Warning sample with one or zero features

#77 biobee closed 4 years ago
2
cumNorm wants a matrix or MRexperiment as input, but will not accept either of them

#76 sklasek closed 4 years ago
7
Build Failing with Release of Bioconductor 3.11

#75 schifferl closed 4 years ago
1
fitZig error missing value

#74 marion-b closed 4 years ago
3
MRfulltable Error: $ operator not defined for this S4 class

#73 kviljoen closed 4 years ago
7
Error: $ operator not defined for this S4 class

#72 jkcopela closed 5 years ago
5
fixed bugs & updated documentation from previous request

#71 dombraccia closed 5 years ago
1
Added IHW as p-value adjustment method and more

#70 dombraccia closed 5 years ago
1
Different results with cumNormMat and MRcounts(norm=TRUE)

#69 alisimecn closed 5 years ago
2
CSS scaling factors in fitZig model matrix

#68 mcalgaro93 closed 5 years ago
1
updated tolerance for wrenchNorm test

#67 dombraccia closed 5 years ago
0
Adding wrenchNorm to metagenomeSeq

#66 dombraccia closed 5 years ago
1
Adding wrenchNorm & updating MRexperiment class definition

#65 dombraccia closed 5 years ago
0
MetagenomeSeq fitZig issue

#64 JingQiuyu closed 4 years ago
10
ref1 in function cumNormStatFast() - Means or Medians?

#63 andrebolerbarros opened 5 years ago
1
Error while CSS normalization when setting useCSSoffset = TRUE

#62 misazaa opened 5 years ago
2
Increase in library size differences with CSS normalization

#61 CarlyMuletzWolz opened 5 years ago
1
[cumNormStatFast] Error: Warning sample with one or zero features

#60 jolespin closed 6 years ago
3
added flexibility for fitFeatureModel

#59 jnpaulson closed 6 years ago
0
Paired Difference Analysis

#58 ninaxhua opened 6 years ago
1
Adding metadata to a biom-loaded MRexperiment object

#57 Jgruetzke opened 6 years ago
2
dupCor object

#56 ninaxhua closed 6 years ago
0
fitZig Error

#55 ninaxhua closed 6 years ago
4
Merging MRexperiment objects

#54 ninaxhua closed 6 years ago
3
coercion functions

#53 lwaldron closed 6 years ago
2
Error in intTime[i, 2] = timePoints[tail(abundanceDifference, n = 1)] : replacement has length zero

#52 MarRey opened 6 years ago
3
newMRexperiment issue

#51 lwebercoralgirl opened 6 years ago
1
not allow covariates/confounders in fitFeatureModel()?

#50 yijuanhu closed 7 years ago
1
Error : At least one NA normalization factors

#49 TsStef closed 7 years ago
5
Making aggregateByTaxonomy return full hierarchy tree and connectin…

#48 jmwagner closed 7 years ago
3
MRcoefs/table/fulltable: eff='x' arg not effective?

#47 handibles opened 7 years ago
2
Adding examples for about 6 functions

#46 jnpaulson closed 7 years ago
0
Adding wrapper functions to visualize fitTimeSeries results

#45 jnpaulson closed 7 years ago
0
normFactor generics +

#44 jnpaulson closed 7 years ago
0
Creating normFactor and libSize generic methods

#43 jnpaulson closed 7 years ago
1