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I might need https://github.com/bulik/ldsc in a separate Docker container.
https://hub.docker.com/r/manninglab/ldsc/dockerfile - could this be a starting point?
ofrei updated
3 years ago
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Hi Sam,
Thanks for doing a tutorial for lassosum on your site! Just a few suggestions on the instructions:
1. With the newest version of lassosum, you can actually just specify LDscores = "EUR…
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Hi Florian,
I hope you're well.
I've been trying to run LDpred2 after implementing the QC steps that you suggested, and I included multiple init_p values for it to fully benefit for parallel compu…
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Hi,
I've been using CELLECT for several months now and never had an issue with Python versions (I use python/3.7.3 - since python 3 is needed to load the modules CELLECT uses), but out of a sudden …
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Hello,
I am following the [partitioned heritability tutorial](https://github.com/bulik/ldsc/wiki/Partitioned-Heritability) step by step, and encounter a "FloatingPointError: invalid value encountered…
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Should these be calculated as part of my `compute_ldscore.py` run? I thought it was just something like the number of SNPs in each annotation, but I'm not sure what the equivalent is for continuous an…
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excuse me, I noticed that *.M_5_50 files of IMPACT707 LDscores are missing, could you please upload them!
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Hello,
I am trying to run the compute_ldscores.py to calculate LDscores for my annotations. I am get an error at this step _[INFO] Applying initial ldscores loop_, this is the error:
_Traceba…
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Hello,
I am trying to run the example from CELLECT using the following command:
snakemake --use-conda -j -s cellect-ldsc.snakefile --configfile example/config-ldsc_example.yml
The job runs f…