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Title: A dynamic nomenclature proposal for SARS-CoV-2 to assist genomic epidemiology
# General Information
## Please paste a link to the paper or a citation here:
Link: https://www.biorxiv.…
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While all the data exists in MLMD, we currently have to rely on orchestrator to represent the executions and other metadata in a nice and organized UI. This would bring a frontend and backend to gener…
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### Context
`augur clades` currently places clades by finding the biggest branches on a tree that satisfy each clades defining mutations as provided by the user.
This method has a few downsides:…
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**[Casey Trimm](https://github.com/c-trimm)** 8 months ago
Create a method in which someone can compare two clades and see their lineage traced back to their most recent ancestor.
i2xzy updated
5 years ago
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Inspired by:
For class detail pages, for facets like "annotation", rather than a flat list ordered descending by annotation count, it would be good to (1) indent the list of terms according to their…
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Currently I do not attempt to “cancel out” or otherwise handle reversions, as the way the lineage information routine is defined is strictly about the full ancestry path of any given sample. It’s also…
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After generating a tracking result with this plugin it would be cool to visualize the lineage tree in [Arboretum (napari-arboretum)](https://github.com/lowe-lab-ucl/arboretum). Currently, if I open ar…
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Where is the android repository for the aquaris-E4.5
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Hello,
I'm trying to use raxml-ng (as part of the 'cellphy' wrapper) to generate lineage trees. However, I'm running into the following issue when trying to run the program (from a vcf.gz file):
C…
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Hi,
I ran the bin refinement module and everything went smoothly until it was finalizing the refined bins.
I obtained the following error:
Uncaught exception: Sys_error("binsO.checkm/storage/tr…