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Hello @zachary-foster I'm having an issue with [metacoder's parse_phyloseq function](https://github.com/grunwaldlab/metacoder/blob/d712d7951e2b5ea00e06c5c13fa6bdf9799a126a/R/parsers.R).
When using…
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## Summary
Hi! Thanks for the great package!
I am developing a package that produces graphs using [ggfittext](https://github.com/wilkox/ggfittext) and I wanted to add label overlap avoidance. S…
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An option like _make_legend = FALSE_ could exist for the edge legend and for the node legend separately.
Currently, the _make_legend_ parameter controls both. In some cases you might only want one o…
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@halexand suggested adding taxonomic breakdowns to sbt signatures and subsequently, gather output. This could facilitate downstream analysis at different taxonomic levels. For example, kraken does ```…
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```
#' Remove the redundant taxon names
#'
#' Remove the names of parent taxa in the begining of their children's names in a \code{classified} object.
#' This is useful for remove genus names in …
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Hello
I have a phylo object and a table linked to it with abundances and I want to import it to the taxmap class. Is there are function to easily do it?
Thanks
Carlos Alberto
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`devtools::install_github("grunwaldlab/metacoder@dev")`
> Downloading GitHub repo grunwaldlab/metacoder@dev
> from URL https://api.github.com/repos/grunwaldlab/metacoder/zipball/dev
> Installin…
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Ideally, this would actively avoid overlaps using some kind of annealing algorithm. Perhaps modeling the distance between the label center and the node center as a spring balanced against repulsion fr…
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The next version of metacoder will likely introduce a more flexible plotting system similar to the `geom`s in ggplot2. Each geom will have parameters that determine its size, color, etc, and return a …
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https://cranchecks.info/pkgs/taxa/
@zachary-foster got email from cran, we need to send a new version fixing these before Dec 19th