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I am getting a weird failure on using TICAv.2.3.1 after upgrading, tica was working on this data set previously.
Error is long, due to it being a recursion error, but the last bit of the traceback …
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Hello,
I have not been able to have ClearVolume work in Fiji at all.
When I try to open a TIFF stack with it, I get the following error:
---
(Fiji Is Just) ImageJ 2.0.0-rc-30/1.49t; Java 1.8.0_45 …
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Hi,
I am trying to run GARD on several alignments before running PARRIS.
I launched GARD on a test alignment file as follows:
avincent@Grumpy:~/Desktop/SOFTWARE/hyphy-2.2.4$
mpirun -np 8 ./HYPHYMP…
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Hi
I was wondering whether gubbins would be able to accurately detect recombination from a core gene alignment, implemented by Roary?
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```
The 'Sequence Error Model' is currently in the Molecular Clock Panel which is
an odd place for it to be. I guess ideally it would be in 'Site Models' tab but
I don't think we really want to allo…
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Hi there,
I was hoping to run the MG94 model and/or M3 (in PAML) but to account for variations in synonymous substitution rates and was wondering how I would do that in Hyphy. I read in [Pond and Mus…
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Hi Sergei,
I would like to use InputRedirect to run SelectionLRT.bf on several hundred trees/files. In the command line version of HYPHYMP there is no prompt for an output file; the output is printe…
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```
What steps will reproduce the problem?
1.
2.
3.
What is the expected output? What do you see instead?
Attached file should run properly.
Please use labels and text to provide additional informa…
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```
What steps will reproduce the problem?
1.
2.
3.
What is the expected output? What do you see instead?
Attached file should run properly.
Please use labels and text to provide additional informa…
-
```
The 'Sequence Error Model' is currently in the Molecular Clock Panel which is
an odd place for it to be. I guess ideally it would be in 'Site Models' tab but
I don't think we really want to allo…