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barbarabarbosa
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beast-mcmc
Automatically exported from code.google.com/p/beast-mcmc
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BEAUti: AlignmentGenerator cannot print sequence with long sites properly
#282
GoogleCodeExporter
opened
8 years ago
0
BEAUTi v1.5.3 cannot unlink gamma (alpha) across partitions.
#281
GoogleCodeExporter
closed
8 years ago
3
BEAUTi v1.5.3 does not include uniform priors on tip dates
#280
GoogleCodeExporter
closed
8 years ago
3
Add variance to Tracer
#279
GoogleCodeExporter
closed
8 years ago
1
tracer build from ant fails to run
#278
GoogleCodeExporter
closed
8 years ago
1
Typo in BEAUTi - Unable to overwrite exsting file
#277
GoogleCodeExporter
closed
8 years ago
1
Element named dataType with idref=colours does not match stored object with same id and tag name generalDataType
#276
GoogleCodeExporter
closed
8 years ago
1
"invalid state index" error when useAmbiguities=true in the treeLikelihood element
#275
GoogleCodeExporter
closed
8 years ago
1
BEAUti: add error message in XML if XML is truncated
#274
GoogleCodeExporter
closed
8 years ago
2
Problems using Beast with blcr checkpointing
#273
GoogleCodeExporter
opened
8 years ago
2
Tracer cannot handle different number of log states and tree state for BayesianSkylineDialog
#272
GoogleCodeExporter
closed
8 years ago
1
correct the link of “BEAUti website”
#271
GoogleCodeExporter
closed
8 years ago
1
BEASTParserDoc is unable to generate Wiki format
#270
GoogleCodeExporter
closed
8 years ago
2
duplicate id in BEAST Parser Library html
#269
GoogleCodeExporter
closed
8 years ago
3
BEAUti: prior distribution error message "find incorrect number format"
#268
GoogleCodeExporter
closed
8 years ago
1
BEAUTi: The user should *always* be allowed to fix the rates if they want
#267
GoogleCodeExporter
closed
8 years ago
2
BEAST: tree prior expansion + growth not working
#266
GoogleCodeExporter
closed
8 years ago
1
BEAST getting slower
#265
GoogleCodeExporter
closed
8 years ago
1
ImportException: Number format error for <treeTraceAnalysis ...
#264
GoogleCodeExporter
closed
8 years ago
1
BEAST ARG bug
#263
GoogleCodeExporter
closed
8 years ago
3
wrong XML of testCataclysmCoalescent.xml
#262
GoogleCodeExporter
closed
8 years ago
2
Error parsing <traceAnalysis> element with id null
#261
GoogleCodeExporter
closed
8 years ago
1
BEAUTi: correct English
#260
GoogleCodeExporter
closed
8 years ago
1
BEAUTi: Mac OS MCMC panel problem
#259
GoogleCodeExporter
closed
8 years ago
1
BEAUTi: Crash when trying to generate an XML file with the covarion.
#258
GoogleCodeExporter
closed
8 years ago
1
BEAUTi: Binary data and multiple partitions does not generate the siteModel correctly.
#257
GoogleCodeExporter
closed
8 years ago
2
BEAUTi: Add comment in XML "skyride.logPopSize is log unit unlike other popSize"
#256
GoogleCodeExporter
closed
8 years ago
1
Turn off parser WARNINGs by default for released version
#255
GoogleCodeExporter
closed
8 years ago
2
BEAUTi generate XML button should be disable after all data partition removed
#254
GoogleCodeExporter
closed
8 years ago
1
BEAUTi add a pop-up box to check the default priors when click Generate BEAST file
#253
GoogleCodeExporter
closed
8 years ago
2
Need to be able to add calibration info on species divergences in starBEAST
#252
GoogleCodeExporter
closed
8 years ago
1
Opening 'examples/starBEAST/g10.xml' gives null pointer exception
#251
GoogleCodeExporter
closed
8 years ago
2
BEAUTi: wrong alignment blocks for multi-gene when choosing "create empty alignment"
#250
GoogleCodeExporter
closed
8 years ago
2
GMRF Skyride - "skyride.popSize" and "skyride.precision" stuck on starting values, "gmrfBlockUpdateOperator" changes are never accepted
#249
GoogleCodeExporter
closed
8 years ago
5
BEAUTi exception (*BEAST) when linking some same taxa for a tree model by given different taxa in total
#248
GoogleCodeExporter
closed
8 years ago
4
BEAUTi: wrong XML in frequecies choosing EMPIRICAL binary COVARION model
#247
GoogleCodeExporter
closed
8 years ago
1
BEAUTi: weak HKY-like Dirichlet prior for GTR relative rates
#246
GoogleCodeExporter
opened
8 years ago
1
*beast log files returns infinity for posterior and likelihood and a constant prior at aprox 22 million generations
#245
GoogleCodeExporter
opened
8 years ago
2
URGENT: Default prior review
#244
GoogleCodeExporter
closed
8 years ago
3
create a beast-core-trace.jar library to peel Tracer out of the BEAST
#243
GoogleCodeExporter
closed
8 years ago
2
BEAUTi: create a check box to choose useAmbiguities in treeLikelihood for binary data
#242
GoogleCodeExporter
closed
8 years ago
1
BEAUTi: operator subtreeSlide size should not be INF
#241
GoogleCodeExporter
closed
8 years ago
3
BEAUTi: useAmbiguities of treeLikelihood should be default as true for binay Covarion
#240
GoogleCodeExporter
closed
8 years ago
1
Ctrl-A in BEAUTi data panel
#239
GoogleCodeExporter
closed
8 years ago
1
Naming of 'patterns' when only 1 partition
#238
GoogleCodeExporter
closed
8 years ago
1
BEAUTi: taxon set not handling multi-tree partition
#237
GoogleCodeExporter
closed
8 years ago
2
dr.evomodel.operators.TraitGibbsOperator is duplicated with parsers in either release_parser.properties or BeastParser.java
#236
GoogleCodeExporter
closed
8 years ago
1
Unlinked DiscretizedBranchRates for multiple loci have the wrong number of dimensions
#235
GoogleCodeExporter
closed
8 years ago
4
Make the dreaded "The initial posterior is zero" error a bit more friendly to debug
#234
GoogleCodeExporter
closed
8 years ago
3
Attribute operatorAnalaysis in mcmc is not working in BEAST
#233
GoogleCodeExporter
closed
8 years ago
1
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