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Hello FragPipe team,
Thank you for your work on building this spectacular tool for the whole community.
Currently I am focusing on N-Glycoproteomics and currently I would like to build a spectra…
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I've been playing with Sage recently, and love it! A few random questions all over the board:
1. If I wanted to split my giant mgf file into lots of little mgf files and have Sage run on each of th…
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I'm trying to compare the spectrum of a light, untagged peptide with the spectrum of its labelled counterpart tagged with a heavy isotope. I'm using the modified cosine score since it considers the ma…
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Hi @picciama
I'm using Oktoberfest to generate a prosit library using a semi tryptic library of uniprot proteome. Here is the output including the error.
2024-02-06 08:43:03,224 - INFO - oktobe…
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**- Upload your log file**
(If a log
[log_2024-06-28_09-55-41.txt](https://github.com/user-attachments/files/16030806/log_2024-06-28_09-55-41.txt)
file hasn't been generated, go to the 'Run' tab i…
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Dear Dr Kuharev,
I hope you are well. Having read your 201% article in Proteomics and 2016 in Nature, I would like to have a look at IsoQuant. However, I cannot get the software to run on my PC – I…
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Hello!
I am trying to analyse some BoxCar DIA files that were generated on a Thermo instrument (Eclipse). FAIMS was used but only at one CV. The isolation windows are non-staggered (see table), and a…
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Hi triqler developers,
first of all: Thanks for adding an import function for DIA-NN main reports. I tried using it by:
```
diann2triqler --file_list_file ~/Documents/anno.tsv --out_file ~/Docu…
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While trying to compile for a .mzid file ([output.mzid.zip](https://github.com/user-attachments/files/16161788/output.mzid.zip)), the NullPointerException below occurs. Apparently because the "start" …
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**Describe the bug**
AlphaPept model is not available.
**To Reproduce**
```
(oktoberfest-env) tobiasko@fgcz-c-072:/scratch/cpanse/PXD028735/oktoberfest$ python -m oktoberfest --config_path spe…