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Hi SpaCET team,
Quick question regarding the Malignant Cell State A and Malignant Cell State B. Can you clarify what the differences are between these, and how they are calculated? Are they compar…
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NOTE: A description of adding a module through Composer is available in Installation. This is an alternative, a manual installation.
Manually downloading Tripal Cultivate Phenotypes Module.
Go t…
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As we are now reserving the negation/NOT qualifier pattern to apply to statement outcomes, and the phenotypes linked to a GeneticCondition are not statement outcomes, consider how we might represent p…
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The idea is to figure out a clear recipe with which we can determine a match between two phenotypes and two diseases.
@sabrinatoro Can you help me with that? I would like to capture all the possib…
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via @sarahhunt
> Attaching disease to BioSample seems odd - many sequenced samples are not associated with a disease; if they were it would be more normal to flag this at the individual level.
> Th…
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Flybase annotates abnormal anatomical entities with FBBT terms; downstream tools need to be able to distinguish FBBT terms from their phenotypes, and need a term for "abnormal eye". Can we find out fr…
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Examplify by chrom 21, although both runs recognized the same dimension of input:
beta
```
cis-QTL mapping: nominal associations for all variant-phenotype pairs
* 655 samples
* 3211 phenotype…
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Dear Omeed,
I have two phenotypes that are moderately correlated (rho = 0.6). Therefore, I used MTAG to boost the power of my single-GWASs. However, when inspecting the results, I see that some of …
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i think it'd be nice to have some precomputed whole-system reports to show. these might be tables (downloadable) or could be pretty graphics, if desired.
for example:
*survey of known disease models …
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Hi,
Thank you so much for developing this amazing tool! I used genome-wide significant loci identified by [MTAG](https://www.nature.com/articles/s41588-017-0009-4) to estimate local genetic correla…