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request from @bebatut
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Hello,
I was wondering if I can use AutoDock-Vina for docking between proteins and peptides.If not, do you have other suggestions?
Best Regards
Soodabeh
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Hello.
While testing RFAA on a large protein-ligand complex structure, I received the following (I believe BLAST-related) error.
```bash
15:08:33.492 ERROR: In /opt/conda/conda-bld/hhsuite_170962…
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**Bug description**
I installed esm using the conda environment
I Folded many proteins using the esm-fold command, however I have found some proteins with physically impossible structure.
**Rep…
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I'm having trouble opening up another structure within an already running session in VSCode. I am ssh-ed to a cloud instance where I have VSCode and Protein Viewer running. When I click home -> open, …
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Implement sorting of rows by a given column (ex. cell line, protein, structure, gene symbol, etc)
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I am using these structures
https://www.rcsb.org/structure/6D9H
https://www.rcsb.org/structure/5N2S
And both of them contain bound things. 6D9H has a bound G - Protein, while 5N2S has a cytochr…
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Hello, aquilazhang
I'm glad that PLANET is a program that is easy to use and precise.
However, I've been trying to utilize the PLANET project in Google Colab and have encountered some issues that…
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### Describe the bug
#the guideline in README is
##Run GalaxyPepDock
* Usage: $GALAXY_HOME/bin/GalaxyPepDock [-h] [-t TITLE] [-p INPUT PDB File] [-s INPUT Sequence File]
* Input argument…
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Hi,
I've heard of this strong model which can learn atomic coordinates. Now I want to adapt this model for my project, but I find the code is a bit complicated and hard to follow. (The paper also c…