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## Background
* Wikipedia article [about ASN.1](https://en.wikipedia.org/wiki/ASN.1)
* ISO Standard [ISO/IEC 8824-1:2021](ISO/IEC 8824-1:2021), including the [RSS](https://www.iso.org/contents/dat…
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## *Repository Creation Request*
Use this to get your experiment repository created or updated on GitHub under Virtual Labs organization.
1. #### Coordinating Institute: IIITH
2. #### Approver’…
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Hello ! I'm still new to learning on proteins and I was wondering how to train on the Structure Similarity Task (at least in an efficient manner) when using the graph format for PyTorch Geometric.
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Hi, I was trying to add hydrogens to a protein's PDB file with obabel using -p option and got every TRP residues with wrong hydrogens.
`obabel input.pdb -O output.pdb -p 7.4`
Here is the PyMOL v…
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Hi everyone,
In this project, we have a bunch of experimental data on the binding of small molecules to WDR91. Many of the molecules are in nice matched pairs, in which the molecules differ by a si…
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Regarding the issue of de novo gene structure prediction, it seems that there is no model for watermelon in the Augustus software. Did you build the model yourself? How can one construct a reasonable …
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Hoi hoi,
I was working on the backmapping of a CG Martini bilayer+proteins with ions. To my surprise I found that after the backmapping all my ions are gone. Am I missing an obvious setting or reas…
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**Command that I ran:**
```
asap-ml build-dataset schnet --exp-file unknown_error.json \
--structures '*_complex.pdb' \
--ds-cache ~/dataset_cache_local.pkl \
--xtal-regex '(?
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I am highly interested in the prediction of protein conformations within this project. I recently attempted the prediction of adenosine kinase and obtained a pdb file along with two npz format files. …
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Hello.
When running RoseTTAFold-All-Atom using the following input YAML config file, I observed that the inference code returned a `.pdb` file that contains a predicted protein structure with the f…